View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4315_high_7 (Length: 380)
Name: NF4315_high_7
Description: NF4315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4315_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 1885478 - 1885830
Alignment:
| Q |
10 |
agaagcaaaggatacaccaaacaatggcagatggagaatattatttatttgacaacatttcagcttatcaaattcgcagaacacctctgatttctaccgc |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1885478 |
agaaacaaaggatacaccaaacaatggcagatggagaatattatttatttgacaacatttcagcttatcaaattcgcagaacacctctgatttctaccgc |
1885577 |
T |
|
| Q |
110 |
gcagcaagatagatgtgtgtggaaacttgagaaaaacagtatctattccgttcgtagcgcatacaggagcatcatggaaaaggatgtaaattctcatcag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1885578 |
gcagcaagatagatgtgtgtggaaacttgagaaaaacagtatctattccgttcgtagcgcatacaggagcatcatggaaaaggatgtaaattctcatcag |
1885677 |
T |
|
| Q |
210 |
cacggaattgatggtaattggaagcaaatttggcgcaacaaaatacttccacgggattaagaactttctttggcgagttactcgcgaatttcttccaaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1885678 |
cacggaattgatggtaattggaagcaaatttggcgcaacaaaatacttccacgggattaagaactttctttggcgagttactcgcgaatttcttccaaca |
1885777 |
T |
|
| Q |
310 |
aagggttcgactgcaggctaacggagtcaattgaacccaacagtgtccgttct |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1885778 |
aagggttcgactgcaggctaacggagtcaattgaacccaacagtgtccgttct |
1885830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University