View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4315_low_2 (Length: 604)
Name: NF4315_low_2
Description: NF4315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4315_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 596
Target Start/End: Complemental strand, 36809578 - 36809016
Alignment:
| Q |
18 |
agatttataagagaaacaacttatattcatgccttaaaattttggtttgagatatgttctaatctattgctggtcttgacatacttgtttcattagtgtc |
117 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
36809578 |
agatttagaagagaaacaactcatattcatgccttaaaattttggtttgagatatgttctaatctcttgttggtcttgacatacttgtttcattagtgtc |
36809479 |
T |
|
| Q |
118 |
atgttattttgttaggatatttgacatccaaatgtcacaatcaatcaacagagattgagatcaaatggttgagatttctcaggcatttcatcttagttta |
217 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36809478 |
atattattttgttaggatatttgatatccaaatgtcacaatcaatcaacagagattgagatcaaatggttgagatttctcag--------------ttta |
36809393 |
T |
|
| Q |
218 |
aattagccaaatcaaaatatgctgcatttacttcatcattaatttaagatcaaacggttgagattacatagtgaattttacacaattaaataatttgtac |
317 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36809392 |
aattagcaaaatcaaaatatgctgcatttacttcatcattaatttaagatcaaacggttgagattacatagtgaattttacacaattaaataatttatac |
36809293 |
T |
|
| Q |
318 |
gttgatccatatcggacggccaagaaccatgtatgtcattgtcaacgaacaaacaagtagaatccaaattcaaaaaagtatatggaattaaataatgaat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36809292 |
attgatccatatcggacggccaagaaccatgtatgtcattgtcaaccaac-aacaagtagaatccaaattcaaaaaagtatatgggattaaataatgaat |
36809194 |
T |
|
| Q |
418 |
gtgtagaagcaaacacctttcttgatttcttcttactctagctaacggtcacaacagcacaacacaagcaaacaatggcgaaactgaaaccctacatttc |
517 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36809193 |
gtgtaaaagcaaacacctttcttgatttcttcttgctctagctaacggtcacaa-agcacaacacaagcaaacaatggcgaaactgaaaccctgcatttc |
36809095 |
T |
|
| Q |
518 |
cacaacccaatcccttcattcaattccaaatcacactcttccaattccaatctccaaattcaacatcaattttcatctc |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36809094 |
cacaacccaatcccttcattcaattccaaatcacactcttccaattccaatctccaaattcaacatcaattttcatctc |
36809016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 596
Target Start/End: Original strand, 7110507 - 7110564
Alignment:
| Q |
539 |
aattccaaatcacactcttccaattccaatctccaaattcaacatcaattttcatctc |
596 |
Q |
| |
|
||||||||||||||||||| |||||| | |||| | ||||| |||||||| ||||||| |
|
|
| T |
7110507 |
aattccaaatcacactctttcaattctattctctagattcatcatcaattctcatctc |
7110564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 535 - 596
Target Start/End: Original strand, 38031445 - 38031506
Alignment:
| Q |
535 |
attcaattccaaatcacactcttccaattccaatctccaaattcaacatcaattttcatctc |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| | ||||| |||||||| ||||||| |
|
|
| T |
38031445 |
attcaattccaaatcacactcttccaattccattctctagattcatcatcaattctcatctc |
38031506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 588
Target Start/End: Original strand, 13277085 - 13277138
Alignment:
| Q |
535 |
attcaattccaaatcacactcttccaattccaatctccaaattcaacatcaatt |
588 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
13277085 |
attcaattccaaatcagactcttccaattccaatctacagattcatcatcaatt |
13277138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 596
Target Start/End: Original strand, 19229115 - 19229176
Alignment:
| Q |
535 |
attcaattccaaatcacactcttccaattccaatctccaaattcaacatcaattttcatctc |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | || | ||||| |||||||| ||||||| |
|
|
| T |
19229115 |
attcaattccaaatcacactcttccaattccattatctagattcatcatcaattctcatctc |
19229176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 596
Target Start/End: Complemental strand, 28777528 - 28777467
Alignment:
| Q |
535 |
attcaattccaaatcacactcttccaattccaatctccaaattcaacatcaattttcatctc |
596 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| | ||||| |||||||| ||||||| |
|
|
| T |
28777528 |
attcaatttcaaatcacactcttccaattccattctctagattcatcatcaattctcatctc |
28777467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 535 - 571
Target Start/End: Original strand, 47429953 - 47429989
Alignment:
| Q |
535 |
attcaattccaaatcacactcttccaattccaatctc |
571 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47429953 |
attcaatttcaaatcacactcttccaattccaatctc |
47429989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 539 - 596
Target Start/End: Complemental strand, 32348880 - 32348823
Alignment:
| Q |
539 |
aattccaaatcacactcttccaattccaatctccaaattcaacatcaattttcatctc |
596 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| | ||||| |||||||| ||||||| |
|
|
| T |
32348880 |
aatttcaaatcacactcttccaattccattctctagattcatcatcaattctcatctc |
32348823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University