View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4315_low_5 (Length: 423)
Name: NF4315_low_5
Description: NF4315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4315_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 137 - 413
Target Start/End: Original strand, 29728578 - 29728858
Alignment:
| Q |
137 |
catatgattctttcatttgctttgtgagattacaataaaatataaat----tcaacaaatttggagaatgatttgtgcaatatttacagaatcaggnnnn |
232 |
Q |
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| T |
29728578 |
catatgattcttccatttgctttgtgagattacaataaaatataaatcaaatcaacaaatttggagaatgatttgtgcaatatttacaagatcaggaaaa |
29728677 |
T |
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| Q |
233 |
nnnntgtaattacctgattagaaaacagatcgaaattgaagcagaagtcccaaaatgatgagttaatttcaaaaccctcgatttctaatcgtacacgc-g |
331 |
Q |
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| T |
29728678 |
aaa-tgtaattaactgattagaagacaaatcgaaattgaagcagaagtcccaaaatgatgagttaatttcaaaaccctcaatttgtaatcgtaagcgcgg |
29728776 |
T |
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| Q |
332 |
tgcctcactcgaaaactccggtgtagctctcgtcaatttcgcactaccagtacaacaaaaccttcaatatatccttcctatg |
413 |
Q |
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| T |
29728777 |
tgtcacactctaaaacgtcggcgtagctctcgtcgatttcgcacaaccagtacaacaaaaccttcaatatccccttcctatg |
29728858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 29727279 - 29727339
Alignment:
| Q |
72 |
ttaagaggttcaggttgaatgattgttgcccaaaatagcataaagcttctattctaaagaa |
132 |
Q |
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| T |
29727279 |
ttaagaggttcaggttgaatgattgttgcccaaaatagcataaagcttctattctaaagaa |
29727339 |
T |
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