View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4315_low_6 (Length: 408)

Name: NF4315_low_6
Description: NF4315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4315_low_6
NF4315_low_6
[»] chr5 (3 HSPs)
chr5 (1-387)||(42926227-42926616)
chr5 (50-125)||(42310444-42310519)
chr5 (67-97)||(212969-212999)
[»] chr8 (1 HSPs)
chr8 (49-125)||(10929382-10929458)
[»] chr2 (2 HSPs)
chr2 (36-125)||(17628956-17629046)
chr2 (36-125)||(17674032-17674122)
[»] chr4 (2 HSPs)
chr4 (51-125)||(24968689-24968763)
chr4 (68-98)||(26363652-26363682)
[»] chr3 (1 HSPs)
chr3 (68-115)||(31340794-31340840)
[»] chr7 (1 HSPs)
chr7 (68-97)||(34311353-34311382)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 42926616 - 42926227
Alignment:
Q  1 aaatcgtttcaaaatttacttcgagaccaacatcccattctaccccataaatcgtgacacgccataaaaatcgtgtcacgattcttcactttctcaaatt 100  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  42926616 aaatcgtttcacaatttgcttcgagaccaacatcccattctgccccataaatcatgacacgccataagaatcgtgtcacgattcttcactttctcaaatt 42926517  T
Q  101 caaatttttgagtcaaattgcaacacataaatcatattcaaatcacttcctttagtggtcataatatgataatcactacattccatagatccattttttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42926516 caaatttttgagtcaaattgcaacacataaatcatattcaaatcacttcctttagtggtcataatatgataatcactacattccatagatccattttttc 42926417  T
Q  201 accaaattttttactattttcttccatccatttaaattgatagcaattgaaattgtaaccgtttctttcgcaaagaaattaaaggtattttttgtg---n 297  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  42926416 accaaattttttactattttcttccatccatttaaattgacagcaattgaaattgtaaccgtttctttcgcaaagaaattaaaggtattttttgtgaaaa 42926317  T
Q  298 nnnnnnnnntaataatgaaaggaaaattaagttttgccttcgcctttcagcttcatgtatagaagtaaacttacggcactatcaacacct 387  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42926316 aaaaaaaaataataatgaaaggaaaattaagttttgccttcgcctttcagcttcatgtatagaagtaaacttacggcactatcaacacct 42926227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 42310444 - 42310519
Alignment:
Q  50 aatcgtgacacgccataaaaatcgtgtcacgattcttcactttct-caaattcaaatttttgagtcaaattgcaaca 125  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||| |||||||||    
T  42310444 aatcgtgacacgccataagaatcgtgtcacgattcttcactttctccaaactc-aatttttgagtcacattgcaaca 42310519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 97
Target Start/End: Complemental strand, 212999 - 212969
Alignment:
Q  67 aaaatcgtgtcacgattcttcactttctcaa 97  Q
    |||||||||||||||||||||||||||||||    
T  212999 aaaatcgtgtcacgattcttcactttctcaa 212969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 10929458 - 10929382
Alignment:
Q  49 aaatcgtgacacgccataaaaatcgtgtcacgattcttcactttctcaaattcaaatttttgagtcaaattgcaaca 125  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  10929458 aaatcgtgacatgccataagaatcgtatcacgattcttcactttctcaaattcatatttttgagtcaaatagcaaca 10929382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 17629046 - 17628956
Alignment:
Q  36 cattctaccccataaatcgtgacacgccataaaaatcgtgtcacgattcttcactttct-caaattcaaatttttgagtcaaattgcaaca 125  Q
    |||||| || || |||||||||||| |||||| |||||||||| ||||||||||||||| |||| || |||||||||||||||||||||||    
T  17629046 cattctgcctcagaaatcgtgacacaccataagaatcgtgtcatgattcttcactttctccaaactccaatttttgagtcaaattgcaaca 17628956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 17674122 - 17674032
Alignment:
Q  36 cattctaccccataaatcgtgacacgccataaaaatcgtgtcacgattcttcactttct-caaattcaaatttttgagtcaaattgcaaca 125  Q
    |||||| || || |||| |||||||||||||| |||||||||||||||||||||||| | |||| |  |||||||||||||||||||||||    
T  17674122 cattctgcctcagaaattgtgacacgccataagaatcgtgtcacgattcttcactttttccaaacttcaatttttgagtcaaattgcaaca 17674032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 24968763 - 24968689
Alignment:
Q  51 atcgtgacacgccataaaaatcgtgtcacgattcttcactttct-caaattcaaatttttgagtcaaattgcaaca 125  Q
    ||||||||| ||||||| |||||||||||||||||||||||| | |||| || ||||||||||||| |||||||||    
T  24968763 atcgtgacaagccataagaatcgtgtcacgattcttcactttatccaaactc-aatttttgagtcacattgcaaca 24968689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 98
Target Start/End: Complemental strand, 26363682 - 26363652
Alignment:
Q  68 aaatcgtgtcacgattcttcactttctcaaa 98  Q
    |||||||||||||||||||||||||||||||    
T  26363682 aaatcgtgtcacgattcttcactttctcaaa 26363652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 31340794 - 31340840
Alignment:
Q  68 aaatcgtgtcacgattcttcactttctcaaattcaaatttttgagtca 115  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  31340794 aaatcgtgtcacgattcttcactttctcaaaatc-catttttgagtca 31340840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 34311353 - 34311382
Alignment:
Q  68 aaatcgtgtcacgattcttcactttctcaa 97  Q
    ||||||||||||||||||||||||||||||    
T  34311353 aaatcgtgtcacgattcttcactttctcaa 34311382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University