View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4315_low_8 (Length: 323)

Name: NF4315_low_8
Description: NF4315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4315_low_8
NF4315_low_8
[»] chr6 (4 HSPs)
chr6 (1-141)||(35045916-35046056)
chr6 (204-307)||(33051619-33051722)
chr6 (181-244)||(886484-886547)
chr6 (181-244)||(2918610-2918673)
[»] chr4 (7 HSPs)
chr4 (216-263)||(2467986-2468033)
chr4 (201-243)||(3653580-3653622)
chr4 (208-256)||(29134721-29134769)
chr4 (217-264)||(49867498-49867545)
chr4 (208-263)||(53959047-53959102)
chr4 (208-256)||(44286432-44286480)
chr4 (208-256)||(47928604-47928652)
[»] chr8 (1 HSPs)
chr8 (208-266)||(39192581-39192639)
[»] chr5 (4 HSPs)
chr5 (207-256)||(10940005-10940054)
chr5 (217-266)||(11088296-11088345)
chr5 (183-227)||(31941325-31941369)
chr5 (208-263)||(36571068-36571123)
[»] chr3 (1 HSPs)
chr3 (208-266)||(51295131-51295189)
[»] chr2 (4 HSPs)
chr2 (208-266)||(31079925-31079983)
chr2 (209-266)||(19983120-19983177)
chr2 (181-249)||(24401380-24401447)
chr2 (208-266)||(39096029-39096087)
[»] chr7 (3 HSPs)
chr7 (189-253)||(35858580-35858644)
chr7 (208-247)||(34590319-34590358)
chr7 (208-249)||(34790463-34790504)
[»] chr1 (1 HSPs)
chr1 (208-256)||(40901500-40901548)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 9e-67; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 35045916 - 35046056
Alignment:
Q  1 taacaaattgagaactagttttatttaagtaaaaaattatattatggtgctcccttaaataagtgggtttaattaagtataatatttacatcggtagtgt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  35045916 taacaaattgagaactagttttatttaagtaacaaattatattatggtgctccctgaaataagtgggtttaattaagtataatatttacatcggtagtga 35046015  T
Q  101 gatcaaccattggaatgtttatgggttaatggtggctagtc 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35046016 gatcaaccattggaatgtttatgggttaatggtggctagtc 35046056  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 204 - 307
Target Start/End: Original strand, 33051619 - 33051722
Alignment:
Q  204 aactaaaaatgaattttatgatagtgaacaaacagaaatagctttaaatttttcttaaaatctgtnnnnnnntacatataattatgattttcctagatcg 303  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  33051619 aactaaaaatgaattttatgatagtgaacaaacagaaatagttttaaatttttcttaaaatctgtaaaaaaatacatataattatgattttcctagatcg 33051718  T
Q  304 tcta 307  Q
    ||||    
T  33051719 tcta 33051722  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 886547 - 886484
Alignment:
Q  181 tcaagtgtaagaatttcaaaacaaactaaaaatgaattttatgatagtgaacaaacagaaatag 244  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| | |||||||||||||    
T  886547 tcaagtgtaagagtttcaaaacaaactaaaaatgatttttatgatagtaagcaaacagaaatag 886484  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 2918610 - 2918673
Alignment:
Q  181 tcaagtgtaagaatttcaaaacaaactaaaaatgaattttatgatagtgaacaaacagaaatag 244  Q
    |||||||||||| ||||||||||||| |||||| | |||||||||| | | |||||| ||||||    
T  2918610 tcaagtgtaagagtttcaaaacaaacaaaaaataatttttatgataataagcaaacataaatag 2918673  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 2468033 - 2467986
Alignment:
Q  216 attttatgatagtgaacaaacagaaatagctttaaatttttcttaaaa 263  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||    
T  2468033 attttatgatagtaaacaaacagaaatagctttagatttttcttaaaa 2467986  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 3653622 - 3653580
Alignment:
Q  201 acaaactaaaaatgaattttatgatagtgaacaaacagaaata 243  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  3653622 acaaactaaaaatgatttttatgatagtgaacaaacagaaata 3653580  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 29134721 - 29134769
Alignment:
Q  208 aaaaatgaattttatgatagtgaacaaacagaaatagctttaaattttt 256  Q
    |||||||| |||||||||||| |||||| ||||||||||||| ||||||    
T  29134721 aaaaatgatttttatgatagtaaacaaaaagaaatagctttagattttt 29134769  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 49867498 - 49867545
Alignment:
Q  217 ttttatgatagtgaacaaacagaaatagctttaaatttttcttaaaat 264  Q
    ||||||| |||| |||||||||||||||||||| |||||| |||||||    
T  49867498 ttttatgttagtaaacaaacagaaatagctttagattttttttaaaat 49867545  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 53959102 - 53959047
Alignment:
Q  208 aaaaatgaattttatgatagtgaacaaacagaaatagctttaaatttttcttaaaa 263  Q
    |||||||| ||||||| |||| |||||||| ||||||||||| |||||| ||||||    
T  53959102 aaaaatgatttttatgttagtaaacaaacaaaaatagctttagattttttttaaaa 53959047  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 44286480 - 44286432
Alignment:
Q  208 aaaaatgaattttatgatagtgaacaaacagaaatagctttaaattttt 256  Q
    |||||| | |||||| ||||| |||||||| ||||||||||||||||||    
T  44286480 aaaaataatttttataatagtaaacaaacaaaaatagctttaaattttt 44286432  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 47928652 - 47928604
Alignment:
Q  208 aaaaatgaattttatgatagtgaacaaacagaaatagctttaaattttt 256  Q
    |||||||||||||||||||||  |||||||||||||  |||| ||||||    
T  47928652 aaaaatgaattttatgatagtagacaaacagaaataattttagattttt 47928604  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 39192581 - 39192639
Alignment:
Q  208 aaaaatgaattttatgatagtgaacaaacagaaatagctttaaatttttcttaaaatct 266  Q
    |||| ||| |||||||||||| ||||||||||||||||||||||||||| | |||||||    
T  39192581 aaaattgatttttatgatagtaaacaaacagaaatagctttaaatttttttaaaaatct 39192639  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 10940005 - 10940054
Alignment:
Q  207 taaaaatgaattttatgatagtgaacaaacagaaatagctttaaattttt 256  Q
    ||||||||| |||||||||||| |||||||||||||||||||| ||||||    
T  10940005 taaaaatgatttttatgatagtaaacaaacagaaatagctttagattttt 10940054  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 11088345 - 11088296
Alignment:
Q  217 ttttatgatagtgaacaaacagaaatagctttaaatttttcttaaaatct 266  Q
    |||||||||||| |||||| ||||||||||||| |||||| |||||||||    
T  11088345 ttttatgatagtaaacaaatagaaatagctttagattttttttaaaatct 11088296  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 31941325 - 31941369
Alignment:
Q  183 aagtgtaagaatttcaaaacaaactaaaaatgaattttatgatag 227  Q
    |||||||||| |||||||||||||||||||||| ||| |||||||    
T  31941325 aagtgtaagagtttcaaaacaaactaaaaatgattttaatgatag 31941369  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 36571123 - 36571068
Alignment:
Q  208 aaaaatgaattttatgatagtgaacaaacagaaatagctttaaatttttcttaaaa 263  Q
    |||||||| |||||||||||| || ||||| ||||||||||| |||||| ||||||    
T  36571123 aaaaatgatttttatgatagtaaagaaacaaaaatagctttagattttttttaaaa 36571068  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 51295131 - 51295189
Alignment:
Q  208 aaaaatgaattttatgatagtgaacaaacagaaatagctttaaatttttcttaaaatct 266  Q
    |||||||| |||||||||||| |||||||||||| ||||| | |||||| |||||||||    
T  51295131 aaaaatgatttttatgatagtaaacaaacagaaacagcttcagattttttttaaaatct 51295189  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 31079925 - 31079983
Alignment:
Q  208 aaaaatgaattttatgatagtgaacaaacagaaatagctttaaatttttcttaaaatct 266  Q
    |||||||| |||||||||||| |||||||| ||||||||||| |||||| | |||||||    
T  31079925 aaaaatgatttttatgatagtaaacaaacataaatagctttagatttttttaaaaatct 31079983  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 19983177 - 19983120
Alignment:
Q  209 aaaatgaattttatgatagtgaacaaacagaaatagctttaaatttttcttaaaatct 266  Q
    ||||||| |||||||||||| |||||||||||||| ||||| |||||| | |||||||    
T  19983177 aaaatgatttttatgatagtaaacaaacagaaataactttagatttttttaaaaatct 19983120  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 24401380 - 24401447
Alignment:
Q  181 tcaagtgtaagaatttcaaaacaaactaaaaatgaattttatgatagtgaacaaacagaaatagcttta 249  Q
    |||||||||||| ||||||| |  | ||||||||| |||||||||||| ||||||||||||||| ||||    
T  24401380 tcaagtgtaagagtttcaaatctta-taaaaatgatttttatgatagtaaacaaacagaaatagattta 24401447  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 39096029 - 39096087
Alignment:
Q  208 aaaaatgaattttatgatagtgaacaaacagaaatagctttaaatttttcttaaaatct 266  Q
    |||||| | |||||||||||| |||||| |||||||| ||||||||||| | |||||||    
T  39096029 aaaaataatttttatgatagtaaacaaatagaaatagttttaaatttttttaaaaatct 39096087  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 35858644 - 35858580
Alignment:
Q  189 aagaatttcaaaacaaactaaaaatgaattttatgatagtgaacaaacagaaatagctttaaatt 253  Q
    |||| |||||||||||| ||||||||| |||||||||||| | |||||| |||||| | ||||||    
T  35858644 aagagtttcaaaacaaattaaaaatgatttttatgatagtaagcaaacaaaaatagttgtaaatt 35858580  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 34590319 - 34590358
Alignment:
Q  208 aaaaatgaattttatgatagtgaacaaacagaaatagctt 247  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  34590319 aaaaatgatttttatgatagtaaacaaacagaaatagctt 34590358  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 34790463 - 34790504
Alignment:
Q  208 aaaaatgaattttatgatagtgaacaaacagaaatagcttta 249  Q
    |||||||| ||||||| |||| ||||||||||||||||||||    
T  34790463 aaaaatgatttttatgttagtaaacaaacagaaatagcttta 34790504  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 40901500 - 40901548
Alignment:
Q  208 aaaaatgaattttatgatagtgaacaaacagaaatagctttaaattttt 256  Q
    |||||||| |||||||||||| | |||||| ||||||||||||||||||    
T  40901500 aaaaatgatttttatgatagtaagcaaacataaatagctttaaattttt 40901548  T

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