View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4315_low_9 (Length: 320)
Name: NF4315_low_9
Description: NF4315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4315_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 592777 - 592489
Alignment:
| Q |
16 |
acaattccatcaaaattaaca---tggtagttgggggtgataaccttagacgacaattgaacatgaatggaggtagtaataactttatagtagatggtgg |
112 |
Q |
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| T |
592777 |
acaattccatcaaaattaacaacatggtagttgggggtgataaccttagacgacaattgaaaatgaatggaggtagtaataactttatagtagatggtgg |
592678 |
T |
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| Q |
113 |
tgatacatttttatcacaatttcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaata |
212 |
Q |
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| T |
592677 |
tgatacattt--atcacaatgtcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaata |
592580 |
T |
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| Q |
213 |
aaattttacacttcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtat |
303 |
Q |
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| T |
592579 |
aaattttacactgcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgacatgatcatggtat |
592489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 579651 - 579939
Alignment:
| Q |
16 |
acaattccatcaaaattaaca---tggtagttgggggtgataaccttagacgacaattgaacatgaatggaggtagtaataactttatagtagatggtgg |
112 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||| | ||||| ||||||||||||||||||| |||| |
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| T |
579651 |
acaattctatcaaaattaacaacatggtagttgggggtgataaacttaaacgacaattgaaaatgaaagcaggtaataataactttatagtagatagtgg |
579750 |
T |
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| Q |
113 |
tgatacatttttatcacaatttcagcagtcatgt--------ttgcatcccaatggttatcaac-tccacactgttcatgaagccaaattcttaacgtaa |
203 |
Q |
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| T |
579751 |
tgatacattt--atcacaatgtcagctgtcatgtactcatgtttgcatct-aatggttatccacctccacacttttcatgaagccaaattctt------- |
579840 |
T |
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| Q |
204 |
ttgaaaataaaattttacacttcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtat |
303 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| |
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| T |
579841 |
-tgaaaataaaattttacactgcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttggacttgacatgaccatggtat |
579939 |
T |
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