View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4316-Insertion-2 (Length: 147)
Name: NF4316-Insertion-2
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4316-Insertion-2 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 7e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 7e-75
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 31102374 - 31102233
Alignment:
| Q |
6 |
tttcatgcctcctagtatttcctttggaagtttccctgtcaattgatttgaagaaagatgaagcctacctagcttggttaaaccaataaaatctaatggt |
105 |
Q |
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| T |
31102374 |
tttcatgcctcctagtatttcctttggaagtttccctgtcaattgatttgaagaaagatgaagcctacctagcttggttaaaccaataaaatctaatggt |
31102275 |
T |
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| Q |
106 |
ataccaccagaaatattagtgttagatatcatgaaggtttca |
147 |
Q |
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| T |
31102274 |
ataccaccagaaatattagtgttagatatcatgaaggtttca |
31102233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 31057939 - 31057802
Alignment:
| Q |
6 |
tttcatgcctcctagtatttcctttggaagtttccctgtcaattgatttgaagaaagatgaagcctacctagcttggttaaaccaataaaatctaatggt |
105 |
Q |
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| T |
31057939 |
tttcatgcctcctagtacttccattgggagtttcccagtcaattgatttgaagaaagatgaagcacgcccagcttggttaaaccaataaaatctaatggt |
31057840 |
T |
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| Q |
106 |
ataccaccagaaatattagtgttagatatcatgaaggt |
143 |
Q |
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| T |
31057839 |
ataacaccagaaatattattgttagatattataaaggt |
31057802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 31183448 - 31183332
Alignment:
| Q |
24 |
ttcctttggaagtttccctgtcaattgatttgaagaaagatgaagcctacctagcttggttaaaccaataaaatctaatggtataccaccagaaatatta |
123 |
Q |
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| T |
31183448 |
ttcctttggaagtttcccagtcaattgatttgaagaaagatgaagcctacctagcttggtcaaacgagtaagttctaatggtatagcaccagaaatatta |
31183349 |
T |
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| Q |
124 |
gtgttagatatcatgaa |
140 |
Q |
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| T |
31183348 |
ttgttggatatcttgaa |
31183332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 31139729 - 31139622
Alignment:
| Q |
28 |
tttggaagtttccctgtcaattgatttgaagaaagatgaagcctacctagcttggttaaaccaataaaatctaatggtataccaccagaaatattagtgt |
127 |
Q |
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| T |
31139729 |
tttggaagtttcccagtaaattgatttgaagaaagatgaagcctacctagcttggttaaaccaataagttctaatggtataaccccagaaatattattgt |
31139630 |
T |
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| Q |
128 |
tagatatc |
135 |
Q |
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| T |
31139629 |
tggatatc |
31139622 |
T |
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