View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4316_high_18 (Length: 201)
Name: NF4316_high_18
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4316_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 36767238 - 36767093
Alignment:
| Q |
33 |
tcaagttctcttaccttgatttttagaagctctaatgtgtagcttaagaagttttgacaattttgatgttttccaaatagagtattttgtaactgattac |
132 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36767238 |
tcaagttctctcaccttgatttttagaagctttaatgtgtagcttaagaagttttgacaattttgatgttttccaaatagagtattttgta-------gc |
36767146 |
T |
|
| Q |
133 |
ttgattgaaatttgtagcatgtacaacttttgattcacctacgatttgttcat |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36767145 |
ttgattgaaatttgtagcatgtacaacttttgattcacctacgatttgttcat |
36767093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 3 - 186
Target Start/End: Complemental strand, 36754237 - 36754054
Alignment:
| Q |
3 |
attgagtgtggtcaacttctaccttgagtatcaagttctcttaccttgatttttagaagctctaatgtgtagcttaagaagttttgacaattttgatgtt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | | |||||||||||||||| |||||||||||| || ||||| || ||||||||||| |
|
|
| T |
36754237 |
attgagtgtggtcaacttctaccttgagtatcaagttccctcatcatgatttttagaagctccaatgtgtagcttgtgacgtttttacgattttgatgtt |
36754138 |
T |
|
| Q |
103 |
ttccaaatagagtattttgtaactgattacttgattgaaatttgtagcatgtacaacttttgattcacctacgatttgttcatc |
186 |
Q |
| |
|
||||||||||| || ||| || |||||||||||||||||||||||||||||||||| ||||||||| ||| | ||||||||| |
|
|
| T |
36754137 |
ttccaaatagattaaattgcaattgattacttgattgaaatttgtagcatgtacaacctttgattcaattacaacttgttcatc |
36754054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University