View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4316_high_2 (Length: 545)

Name: NF4316_high_2
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4316_high_2
NF4316_high_2
[»] chr6 (18 HSPs)
chr6 (10-535)||(26876891-26877416)
chr6 (88-188)||(26638813-26638913)
chr6 (88-188)||(26744779-26744879)
chr6 (70-161)||(26626514-26626605)
chr6 (70-161)||(26732491-26732582)
chr6 (94-175)||(26827272-26827353)
chr6 (91-162)||(26888243-26888314)
chr6 (88-162)||(31287987-31288064)
chr6 (88-188)||(26805931-26806031)
chr6 (88-162)||(28789775-28789849)
chr6 (88-158)||(28795793-28795863)
chr6 (91-163)||(27657419-27657494)
chr6 (88-122)||(26888393-26888427)
chr6 (93-150)||(26059309-26059366)
chr6 (93-150)||(26079279-26079336)
chr6 (89-161)||(25077396-25077468)
chr6 (132-188)||(26852014-26852070)
chr6 (88-136)||(27601248-27601296)
[»] chr4 (10 HSPs)
chr4 (94-188)||(18720791-18720885)
chr4 (88-188)||(18676261-18676361)
chr4 (94-188)||(18652203-18652297)
chr4 (94-188)||(18686301-18686395)
chr4 (94-188)||(18696107-18696201)
chr4 (92-162)||(18650567-18650638)
chr4 (94-188)||(18728227-18728321)
chr4 (94-162)||(18718786-18718855)
chr4 (100-162)||(18692303-18692366)
chr4 (126-162)||(18682989-18683025)
[»] scaffold0277 (2 HSPs)
scaffold0277 (88-162)||(10350-10424)
scaffold0277 (88-158)||(1394-1464)
[»] chr5 (1 HSPs)
chr5 (89-145)||(29766647-29766703)
[»] chr1 (2 HSPs)
chr1 (88-163)||(265010-265088)
chr1 (91-161)||(26139436-26139506)
[»] chr7 (1 HSPs)
chr7 (91-145)||(10675106-10675160)
[»] chr2 (1 HSPs)
chr2 (88-146)||(18514576-18514634)


Alignment Details
Target: chr6 (Bit Score: 502; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 10 - 535
Target Start/End: Original strand, 26876891 - 26877416
Alignment:
Q  10 atgaatggatttatgtggagcttaagttgttagggaggtcattgaatccaagcgaggatgagattagaacattaagtcgtgcacaaatgggaatccacgt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876891 atgaatggatttatgtggagcttaagttgttagggaggtcattgaatccaagcgaggatgagattagaacattaagtcgtgcacaaatgggaatccacgt 26876990  T
Q  110 gttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatatttgaggacgtgagacttttcg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876991 gttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatatttgaggacgtgagacttttcg 26877090  T
Q  210 tgggtgcaagaaaagaaaagaaaaggataatcataaagttaactgtcttgttgttgttctctcaataagaggaagcttactccacaatctcaagattgca 309  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26877091 tgggtgcaagaagagaaaagaaaaggataatcataaagttaactgtcttgttgttgttctctcaataagaggaagcttactccacaatctcaagattgca 26877190  T
Q  310 tgtttgtgattctgtaagtggatgatgtttgtgcagttcaaaatattgtctgaatttactgtgatggatgtttaatttgcagcatgatcgaagttgtgtt 409  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26877191 tgtttgtgattctgtaagtgaatgatgtttgtgcagttcaaaatattgtctgaatttactgtgatggatgtttaatttgcagcatgatcgaagttgtgtt 26877290  T
Q  410 tgctgttcgacatgtgtccatgtacgttaccgacaattgtgatcacaatcaaatattttatattctcaaattactaccgctgtcaacaaatcaatgccat 509  Q
    || |||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26877291 tggtgttcgacatgtgtccatgtccgttacctacaattgtgatcataatcaaatattttatattctcaaattactaccgctgtcaacaaatcaatgccat 26877390  T
Q  510 tgttgagtccggtgtacgtgtctgtg 535  Q
    ||||||||||||||||||||||||||    
T  26877391 tgttgagtccggtgtacgtgtctgtg 26877416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 26638813 - 26638913
Alignment:
Q  88 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 187  Q
    |||||| ||||||||||||||| || |||||||||| || ||  |||||||||||||||||||||||||||||||  | |||||||||  ||||||||||    
T  26638813 gtgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattcaccaatccttataatagaaagagaaaattagatgaata 26638912  T
Q  188 t 188  Q
    |    
T  26638913 t 26638913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 26744779 - 26744879
Alignment:
Q  88 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 187  Q
    |||||| ||||||||||||||| || |||||||||| || ||  |||||||||||||||||||||||||||||||  | |||||||||  ||||||||||    
T  26744779 gtgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattcaccaatccttataatagaaagagaaaattagatgaata 26744878  T
Q  188 t 188  Q
    |    
T  26744879 t 26744879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 26626514 - 26626605
Alignment:
Q  70 agattagaacattaagtcgtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 161  Q
    |||||| || ||||||  ||||||||||||||||||| |||||||||||||||| || || ||| |||||||| ||||||||||||||||||    
T  26626514 agattaaaatattaaggagtgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgaggatgtcatattcaccaatccttat 26626605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 26732491 - 26732582
Alignment:
Q  70 agattagaacattaagtcgtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 161  Q
    |||||| || ||||||  ||||||||||||||||||| |||||||||||||||| || || ||| |||||||| ||||||||||||||||||    
T  26732491 agattaaaatattaaggagtgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgaggatgtcatattcaccaatccttat 26732582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 26827272 - 26827353
Alignment:
Q  94 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaa 175  Q
    |||| ||||| |||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||  | |||||||||    
T  26827272 aaattggaattcacgtgttgaaggagaaaaggagcatggaggaggatgtgatattcaccaatccttatagtagaaagagaaa 26827353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 26888243 - 26888314
Alignment:
Q  91 cacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 162  Q
    |||||||||||||  | |||||||||||||||   | ||| |||||||||||||||||||||||||||||||    
T  26888243 cacaaatgggaattgaagtgttgaaggagaaaggaaacatggaggaggatgtgatattcaccaatccttata 26888314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 31287987 - 31288064
Alignment:
Q  88 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggagg---atgtgatattcaccaatccttata 162  Q
    ||||||||||||||||||||||||| ||||||||||||| |  ||||||||   |||||||||||||| |||| ||||    
T  31287987 gtgcacaaatgggaatccacgtgttaaaggagaaaaacaacgcagaggaggagaatgtgatattcaccgatccatata 31288064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 26805931 - 26806031
Alignment:
Q  88 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 187  Q
    |||| ||||| |||||||||||||| | |||||||| || ||  |||||| ||||| ||||||||||||||||||| | ||||| |||   |||||||||    
T  26805931 gtgctcaaatcggaatccacgtgttaatggagaaaagcaacacggaggagaatgtggtattcaccaatccttatattagaaagacaaaatcagatgaata 26806030  T
Q  188 t 188  Q
    |    
T  26806031 t 26806031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 28789775 - 28789849
Alignment:
Q  88 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 162  Q
    |||| ||||||||||||||||||   |||||||||| || |  ||||||| |||||||||||||| |||||||||    
T  28789775 gtgcgcaaatgggaatccacgtgagtaaggagaaaagcaacgcagaggagaatgtgatattcaccgatccttata 28789849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 28795793 - 28795863
Alignment:
Q  88 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatcct 158  Q
    |||| ||||||||||||||||||  ||||||||||| || |  ||||||| |||||||||||||| |||||    
T  28795793 gtgcgcaaatgggaatccacgtgaggaaggagaaaagcaacgcagaggagaatgtgatattcaccgatcct 28795863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 27657494 - 27657419
Alignment:
Q  91 cacaaatgggaatccacgtgttgaaggagaaaaacagcat---agaggaggatgtgatattcaccaatccttatat 163  Q
    |||||||||||||||||||||||||| |||||| || |||    |||||||||||| |||||||  ||||||||||    
T  27657494 cacaaatgggaatccacgtgttgaagaagaaaagcaacatggatgaggaggatgtggtattcactgatccttatat 27657419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 26888393 - 26888427
Alignment:
Q  88 gtgcacaaatgggaatccacgtgttgaaggagaaa 122  Q
    |||||||||| ||||||||||||||||||||||||    
T  26888393 gtgcacaaattggaatccacgtgttgaaggagaaa 26888427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 26059309 - 26059366
Alignment:
Q  93 caaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattca 150  Q
    ||||||||||||||||||| ||||||||||| || ||| |||| || ||||| |||||    
T  26059309 caaatgggaatccacgtgtggaaggagaaaagcaacatggaggggggtgtgagattca 26059366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 26079279 - 26079336
Alignment:
Q  93 caaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattca 150  Q
    ||||||||||||||||||| ||||||||||| || ||| |||| || ||||| |||||    
T  26079279 caaatgggaatccacgtgtggaaggagaaaagcaacatggaggggggtgtgagattca 26079336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 25077396 - 25077468
Alignment:
Q  89 tgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 161  Q
    |||| ||| ||||||||| |||  ||||||||||| || ||  || ||||||||||||||||| |||||||||    
T  25077396 tgcaaaaaagggaatccatgtgcggaaggagaaaagcaacaaggatgaggatgtgatattcactaatccttat 25077468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 26852014 - 26852070
Alignment:
Q  132 gaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 188  Q
    |||| ||||||| ||||||||||||||| ||  | ||||||||| ||||||||||||    
T  26852014 gagggggatgtggtattcaccaatccttctagtagaaagagaaaactagatgaatat 26852070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 27601296 - 27601248
Alignment:
Q  88 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagagga 136  Q
    ||||||||||||||||||| ||| |||||||||||| || |||| ||||    
T  27601296 gtgcacaaatgggaatccatgtggtgaaggagaaaagcaacataaagga 27601248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 18720885 - 18720791
Alignment:
Q  94 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 188  Q
    ||||||||||||||||||||||||||||||||| ||   | ||||||||||||||||||||||||||||  | |||||||||  |||||||||||    
T  18720885 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagaaagagaaaattagatgaatat 18720791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 18676361 - 18676261
Alignment:
Q  88 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaata 187  Q
    ||||| ||||||||||||||||||  ||||||||||||| ||   | ||||||||||||||||||||||||||||  | |||||||||  ||||||||||    
T  18676361 gtgcaaaaatgggaatccacgtgtgcaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagaaagagaaaaatagatgaata 18676262  T
Q  188 t 188  Q
    |    
T  18676261 t 18676261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 18652297 - 18652203
Alignment:
Q  94 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 188  Q
    ||||||||||||||||||||||||||||||||| ||   | ||||||||||||||||  ||||||||||  | |||||||||  |||||||||||    
T  18652297 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcattaatccttatagtagaaagagaaaattagatgaatat 18652203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 18686395 - 18686301
Alignment:
Q  94 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 188  Q
    |||||||||||||||||| |||||||||||||| ||   | ||||||||||||||||||||| ||||||  | |||||||||  |||||||||||    
T  18686395 aaatgggaatccacgtgtggaaggagaaaaacaacacgaatgaggatgtgatattcaccaattcttatagtagaaagagaaaattagatgaatat 18686301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 18696201 - 18696107
Alignment:
Q  94 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 188  Q
    |||||||||||||||||| |||||||||||  | |||| | ||||||||||||||||||||||||||||  | ||||||| |  |||||||||||    
T  18696201 aaatgggaatccacgtgtggaaggagaaaagtaacataaatgaggatgtgatattcaccaatccttatagtagaaagagagaattagatgaatat 18696107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 18650638 - 18650567
Alignment:
Q  92 acaaatgggaatccacgt-gttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 162  Q
    |||||| ||||||||| | ||| ||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  18650638 acaaattggaatccactttgttcaagaagaaaagcagcatagagcaggatgtgatattcaccaatccttata 18650567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 18728321 - 18728227
Alignment:
Q  94 aaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttatatgaaaaagagaaagctagatgaatat 188  Q
    |||||||||||||||||   ||||||||||||| ||   | ||||||||||||||||||||||||||||  | | |||||||  |||||||||||    
T  18728321 aaatgggaatccacgtgcgcaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagatagagaaaattagatgaatat 18728227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 18718855 - 18718786
Alignment:
Q  94 aaatgggaatccac-gtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 162  Q
    |||| ||||||||| ||||| ||| |||||| |||||||||| |||||||||||||| ||||||||||||    
T  18718855 aaattggaatccactgtgttcaagaagaaaagcagcatagagcaggatgtgatattctccaatccttata 18718786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 18692366 - 18692303
Alignment:
Q  100 gaatccac-gtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 162  Q
    |||||||| ||||| ||| ||||||| ||||| ||| ||||||||||||||| |||||||||||    
T  18692366 gaatccactgtgttcaagaagaaaaaaagcatggagcaggatgtgatattcatcaatccttata 18692303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 18683025 - 18682989
Alignment:
Q  126 agcatagaggaggatgtgatattcaccaatccttata 162  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  18683025 agcatagagcaggatgtgatattcatcaatccttata 18682989  T

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Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 10424 - 10350
Alignment:
Q  88 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttata 162  Q
    |||| ||||||||||||||||||   |||||||||| || |  ||||||| |||||||||||||| |||||||||    
T  10424 gtgcgcaaatgggaatccacgtgagtaaggagaaaagcaacgcagaggagaatgtgatattcaccgatccttata 10350  T

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Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 1464 - 1394
Alignment:
Q  88 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatcct 158  Q
    |||||||||||||||||||||||  || |||||||| || |  ||||||| | |||||||||||| |||||    
T  1464 gtgcacaaatgggaatccacgtgaggatggagaaaagcaacgcagaggagaacgtgatattcaccgatcct 1394  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 29766647 - 29766703
Alignment:
Q  89 tgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgat 145  Q
    |||||||||||||||||| |||||||||| || || ||| || ||||||||||||||    
T  29766647 tgcacaaatgggaatccatgtgttgaaggcgataagcagtatggaggaggatgtgat 29766703  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 265088 - 265010
Alignment:
Q  88 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggagg---atgtgatattcaccaatccttatat 163  Q
    ||||||||||||||||||||| ||| | |||||||| || ||  |||||||   |||| ||||||||||||||||||||    
T  265088 gtgcacaaatgggaatccacgagttaatggagaaaagcaacagggaggaggataatgttatattcaccaatccttatat 265010  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 26139436 - 26139506
Alignment:
Q  91 cacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgatattcaccaatccttat 161  Q
    ||||||| ||||||||  |||| ||||||||||  ||||| |||||||||||  ||||||| |||||||||    
T  26139436 cacaaattggaatccatatgttcaaggagaaaagaagcatggaggaggatgtcgtattcactaatccttat 26139506  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 10675106 - 10675160
Alignment:
Q  91 cacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgat 145  Q
    |||||||||||||||| |||||||||| |||||||   || ||||||||||||||    
T  10675106 cacaaatgggaatccatgtgttgaaggcgaaaaacgatatggaggaggatgtgat 10675160  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 18514576 - 18514634
Alignment:
Q  88 gtgcacaaatgggaatccacgtgttgaaggagaaaaacagcatagaggaggatgtgata 146  Q
    ||||||||||| ||||| | |||||||||| ||||| ||| || |||||||||||||||    
T  18514576 gtgcacaaatgagaatctatgtgttgaaggcgaaaagcagtatggaggaggatgtgata 18514634  T

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