View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4316_high_3 (Length: 520)
Name: NF4316_high_3
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4316_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 4 - 503
Target Start/End: Original strand, 33953929 - 33954429
Alignment:
| Q |
4 |
ggaggagcagagagtgaaccatctacaatttgctcaaacacccatttattagcagcctgggtcaaatgaacaccatcccaattaaccaccacagatggat |
103 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33953929 |
ggaggatcagaaagtgaaccatctacaatttgctcaaacacccatttattagcagcctgggtcaaatgaacaccatcccaattaaccaccacagatggat |
33954028 |
T |
|
| Q |
104 |
ccttgcatggttttccaatcaaaatctcttttccatcaatcttaacctttgctccacatccaatgtgtaaattgtagttatacttcccaccatgtccaca |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33954029 |
ccttgcatggttttccaatcaaaatctcttttccatcaatcttaacctttgctccacatccaatgtgtaaattatagttatacttcccaccatgtccaca |
33954128 |
T |
|
| Q |
204 |
acaagccctcaaaggttccttaaaacctgttttaatcaagaaaaaccat-nnnnnnncacactttcatggaccaatgatgatattcatggacaaaaatat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33954129 |
acaagccctcaaaggttccttaaaacctgttttaatcaagcaaaaccataaaaaaaacacactttcatggaccaatgctgatattcatggacaaaaatat |
33954228 |
T |
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| Q |
303 |
atttaatcttagtatttaccatgtctgtatgcttgactaatgagagagtacttggctgagtaaacgtcgacataggttatggcagccgagggaagnnnnn |
402 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33954229 |
atttaatcttagtatttaccatgtctgtatgcttgactaatgagagagtacttggctgagtaaacgtcgacataggttatggcagccgagggaagttttt |
33954328 |
T |
|
| Q |
403 |
nncgaagttgaacaacagcttgtttcaattcatgattgaagaacttagccacttcattataagggattgcacatcctgctttgtctactttatctggtgt |
502 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
33954329 |
ttcgaagttgaacaacagcttgtttcagttcatgattgaagaacttagccacttcattataagggattgcgcatcctgctttgtctactttatctgatgt |
33954428 |
T |
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| Q |
503 |
t |
503 |
Q |
| |
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| T |
33954429 |
t |
33954429 |
T |
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