View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4316_high_7 (Length: 300)
Name: NF4316_high_7
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4316_high_7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 8154584 - 8154301
Alignment:
| Q |
17 |
acaatcaactggataactttaaactacattaatactcaccgaaaagcatggatatcgttgaacttaatttccgattcaccaaaacttgtctctaaagttt |
116 |
Q |
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| T |
8154584 |
acaatcaactggataactttaaactacattaatactcaccgaaaagcatggatatcgttgaacttaatttccgattcaccaaaacttgtctctaaagttt |
8154485 |
T |
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| Q |
117 |
ccttggttaagacaatgactatgagagcaatgagaagaaacacaaaagttaacaccctcaaaactaaaagaacaattcttgaaaccgttgagcttgaggg |
216 |
Q |
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| T |
8154484 |
ccttggttaagacaatgactatgagagcaatgagaagaaacacaaaagttaacaccctcaaaagtaaaagaacaattcttgaaaccgttgagcttgaggg |
8154385 |
T |
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| Q |
217 |
tgcactagtaatagtcgttgcagtttctgttgctgttgcactgtgtgtgttattctccatctcaaaaccttacaatagttctaa |
300 |
Q |
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| T |
8154384 |
tgcactagtaatagtcgttgcagttgatgttgctgttgcactgtttgtgttattctccatctcaaaaccttataatagttctaa |
8154301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 8162435 - 8162269
Alignment:
| Q |
47 |
aatactcaccgaaaagcatggatatcgttgaacttaatttccgattcaccaaaacttgtctctaaagtttccttggttaagacaatgactatgagagcaa |
146 |
Q |
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|||||| ||||| ||||||||||||| |||||||||| ||| ||||| ||| |||||||||||||| ||||||||||||||||||| ||||| |
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| T |
8162435 |
aatactaaccgataagcatggatatctttgaacttaagttcagattcccca---------tctaaagtttcctttgttaagacaatgactatgaaagcaa |
8162345 |
T |
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| Q |
147 |
tgagaagaaacacaaaagttaacaccctcaaaactaaaagaacaattcttgaaaccgttgagcttgagggtgcact |
222 |
Q |
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| T |
8162344 |
tgagaaggaacacaaaagttaacaccctcaaaagtaaaagaacagttcttgaaactgttgaacttgagggtgcact |
8162269 |
T |
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