View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4316_low_1 (Length: 592)
Name: NF4316_low_1
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4316_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Original strand, 34570438 - 34571001
Alignment:
| Q |
18 |
agaattccccgctttgaagcatttatattgtctgtgctcaaattgtgaaccaaatttagtacctgtaaatgcaattttctcttcagggaacatgtgaaat |
117 |
Q |
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| T |
34570438 |
agaattccccgctttgaagcatttatattgtctgtgctcaaattgtgaaccaaatttagtacctgtaaatgcaattttctcttcagggaacatgtgaaat |
34570537 |
T |
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| Q |
118 |
cattgattagaaattcttctggaggcaacccaaacaatttctggaatgtagaattcctttgaggtgatggaagattgaactgcaatagaaccctcaatag |
217 |
Q |
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| T |
34570538 |
cattgattagaaattcttctggtggcaacccaaacaatttctggaatgtagaattcctttgaggtgatggaagattgaactgcaatagaaccctcaatag |
34570637 |
T |
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| Q |
218 |
tcagaaacaataattagttaatttcttattgttctatgactaagagtctatgacatattcaaatatattcacataatcatatatacatggggtatgatga |
317 |
Q |
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| T |
34570638 |
tcagaaacaataattagttaatttcttattgttctatgactaagagtctatgacatattcaaatatattcacataatcatatatacatggggtatgatga |
34570737 |
T |
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| Q |
318 |
agattgtgcttaccttttttcctacttccttttccttcttctccaagtaatccttgataatttcaactcctttgttattgtccaagaaaattctcaaatg |
417 |
Q |
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| T |
34570738 |
agattgtgcttaccttttttcctacttccttttccttcttctccaagtaatccttgataattgcaactcctttgttattgtccaagaaaattctcaaatg |
34570837 |
T |
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| Q |
418 |
caatttcgattgagcagattgggcgagttttccttcaagcacgagccacatgtctgccaattctgtggatgtatgctttaggaaattgatctcagcatgt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34570838 |
caatttcgattgagcagattgggcgagttttccttcaagcacgacccacatgtctgccaattctgtggatgtatgctttaggaaattgatctcagcatgt |
34570937 |
T |
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| Q |
518 |
ccaagtgaaacatcctggtcaaatggaccgtcaaaatcaaaaacttccacatacaaaactgatg |
581 |
Q |
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| T |
34570938 |
ccaagtgaaacatcctggtcaaatggaccgtcaaaatcaaaaacttccacatacaaaactgatg |
34571001 |
T |
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