View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4316_low_11 (Length: 269)
Name: NF4316_low_11
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4316_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 11412699 - 11412845
Alignment:
| Q |
11 |
cataggtgaaacaaaaataatgaaaatcaaatctttgttaagtgttagtgtagttgtgtagttgggtttgttaaacaaaaacaatgaaaattaaatcttt |
110 |
Q |
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| T |
11412699 |
cataggtgaaacaaaaataatgaaaatcaaatctttgttaagtgttagtgtagttg--------gatttgttaaacaaaaacaatgaaaatcaaatcttt |
11412790 |
T |
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| Q |
111 |
gttaagtgttagcgtagttgtgtgtagttttgtagctggatttgttaaacaaaaa |
165 |
Q |
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| T |
11412791 |
gttaagtgttagcgtagttgtgtgtagttttgtagctgggtttgttaaacaaaaa |
11412845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 11413060 - 11413154
Alignment:
| Q |
160 |
caaaaatagaaaattgtgttgggtctgattggaggcgatgtgagcggtggtatcctttgcatttaatgcatgtctgcttgtagaaggctgtcatt |
254 |
Q |
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| T |
11413060 |
caaaaatagcaaattgtgttaggactgattggaggcgatgtgagtggtggtatcctttgcatttaatgcatgtctgcttgtagaagactgacatt |
11413154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 11412763 - 11412855
Alignment:
| Q |
19 |
aaacaaaaataatgaaaatcaaatctttgttaagtgttagtgtagttgtgt----------agttgggtttgttaaacaaaaacaatgaaaat |
101 |
Q |
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| T |
11412763 |
aaacaaaaacaatgaaaatcaaatctttgttaagtgttagcgtagttgtgtgtagttttgtagctgggtttgttaaacaaaaacaatgaaaat |
11412855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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