View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4316_low_13 (Length: 252)
Name: NF4316_low_13
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4316_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40382775 - 40382536
Alignment:
| Q |
1 |
cagaatgagtttgatattaagccaccaaggtgcttcgtcaaagggattcagatgtttgataacactccgcttggtgatgtcccagggagtttgaaggttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40382775 |
cagaatgagtttgatattaagccaccaaggtgcttcgtcaaagggattcagatgtttgataacactccgcttggtgatgtcccagggagtttgaaggttg |
40382676 |
T |
|
| Q |
101 |
agctgttgaagagcttgagtagtacactagggactaacataacgagttctacttgtgttgttactggagctgatatactgaagcagcaaggagtcacaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40382675 |
agctgttgaagagcttgagtagtacactagggactaacataacgagttctacttgtgttgttactggagctgatatactgaagcagcaaggagtcacaca |
40382576 |
T |
|
| Q |
201 |
acttagtaaatggaactgcttgttcatcaccattgctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40382575 |
acttagtaaatggaactgcttgttcatcaccattgctctg |
40382536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University