View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4316_low_16 (Length: 241)
Name: NF4316_low_16
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4316_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 1961301 - 1961522
Alignment:
| Q |
18 |
aacccaatcagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaaaagcaacattcattaataaaacacagaattaatgtcat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1961301 |
aacccaatcagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaa--gcaacattcattaataaaacacagaattaatgtcat |
1961398 |
T |
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| Q |
118 |
gtacttacaccaaacaaactcatccttggcaaaggtaaccaactctcaactgatgcattgataataacgcggccattgctttggtgaaggtaaggaagag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1961399 |
gtacttacaccaaacaaactcatccttggcaaaggtaaccaactctcaactgatgcattgataataacacggccattgctttggtgaaggtaaggaagag |
1961498 |
T |
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| Q |
218 |
ccaccaacgttggataaacattcc |
241 |
Q |
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||||||| |||||||||||||||| |
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| T |
1961499 |
ccaccaaagttggataaacattcc |
1961522 |
T |
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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 25548948 - 25548862
Alignment:
| Q |
18 |
aacccaatcagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaaaagcaacattcattaataaaacaca |
104 |
Q |
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| T |
25548948 |
aacccaatcagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaaaagaaacattcattaataaaacaca |
25548862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 22621699 - 22621785
Alignment:
| Q |
18 |
aacccaatcagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaaaagcaacattcattaataaaacaca |
104 |
Q |
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| T |
22621699 |
aacccaatcagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaaaagaaacattcattaataaaacaca |
22621785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 20011584 - 20011670
Alignment:
| Q |
18 |
aacccaatcagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaaaagcaacattcattaataaaacaca |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20011584 |
aacccaatcagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaaaagaaacattcattaataaaacaca |
20011670 |
T |
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