View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4316_low_17 (Length: 237)
Name: NF4316_low_17
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4316_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 8762784 - 8762565
Alignment:
| Q |
1 |
tgttgcagagaaaggaatggttgaaggcatgtctcagagagctctagaatcaaggtttgcatcaagtcttccgagttctgtgatcagagaaatcgaagaa |
100 |
Q |
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| T |
8762784 |
tgttgccgagaaaggaatggttgaaggcatgtctcagagagctctagaatcaaggtttgcatcaagtcttccgagttctgtgatcagagaaatcgaagaa |
8762685 |
T |
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| Q |
101 |
aaaagaacaaacaaacttcttgcgccaacacttcaatatttgcaaacactggcatatcaaacaagaggtgtaaacaatgtttttaacaatttcaaccaat |
200 |
Q |
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| T |
8762684 |
aaaagaacaaacaaacttcttgcgccaacacttcaatatttgcaaacactggcatatcaaacaagaggtgtaaacaatgtttttaacaatttcaaccaat |
8762585 |
T |
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| Q |
201 |
ttccaacacatcatgttgac |
220 |
Q |
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| T |
8762584 |
ttccaacacatcatgttgac |
8762565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 8789137 - 8789054
Alignment:
| Q |
134 |
caatatttgcaaacactggcatatcaaacaagaggtgtaaacaatgtttttaacaatttcaaccaatttccaacacatcatgtt |
217 |
Q |
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| T |
8789137 |
caatgtttgcatacactggcatatcaaacaagaggtacaaacaatgtttttaaccattttaaccaatttccaacacatcatgtt |
8789054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 8789266 - 8789175
Alignment:
| Q |
1 |
tgttgcagagaaaggaatggttgaaggcatgtctcagagagctctagaatcaaggtttgcatcaagtcttccgagttctgtgatcagagaaat |
93 |
Q |
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||||||||||||||||||||||| |||| | ||||| ||||||||| ||||| |||||||||| |||| |||||||||||||||||||||| |
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| T |
8789266 |
tgttgcagagaaaggaatggttggaggc-tatctcacagagctctaacatcaatgtttgcatcaggtctatcgagttctgtgatcagagaaat |
8789175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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