View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4316_low_18 (Length: 228)
Name: NF4316_low_18
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4316_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 30286637 - 30286438
Alignment:
| Q |
18 |
cttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaataaattcataaatatttttaacgacagtaattagtgtcacttaaact |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30286637 |
cttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaataaattcataaatatttttaacgatagtaattagtgtcacttaaact |
30286538 |
T |
|
| Q |
118 |
aataataatcgtttaagataatttttgccctacctccctaatctccgcataattgaccaatatatccaagtctttaagctgtggatttttctctgtggtg |
217 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30286537 |
aataataatcgtttaagataattttcgctctacctccctaatctccgcataattgaccaatatatccaagtctttaagctgtggatttttctctggggtg |
30286438 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 30315218 - 30315026
Alignment:
| Q |
18 |
cttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaataaattcataaatatttttaacgacagtaattagtgtcacttaaact |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| || | |
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| T |
30315218 |
cttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaataaattcgtaaatatttttaacgatagtaattagtgtcactttaatt |
30315119 |
T |
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| Q |
118 |
aataataatcgtttaagataatttttgccctacctccctaatctccgcataattgaccaatatatccaagtctttaagctgtggatttttctc |
210 |
Q |
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||||||| || |||||||||||||| || ||||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||||||| |
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| T |
30315118 |
aataatagtcttttaagataattttggctctacctccctaatctccgcataattcactaatatatccaagtcttgaagttgtggatttttctc |
30315026 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 30304305 - 30304113
Alignment:
| Q |
18 |
cttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaataaattcataaatatttttaacgacagtaattagtgtcacttaaact |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| || | |
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| T |
30304305 |
cttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaactaaattcattaatatttttaacgatagtaattagtgtcactttaatt |
30304206 |
T |
|
| Q |
118 |
aataataatcgtttaagataatttttgccctacctccctaatctccgcataattgaccaatatatccaagtctttaagctgtggatttttctc |
210 |
Q |
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||||||| || |||||||||||||| || ||||||||||||||||||||| | |||| |||||||||||||||| ||| ||| |||||||||| |
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| T |
30304205 |
aataatagtcttttaagataattttcgctctacctccctaatctccgcattagtgactaatatatccaagtcttgaagttgttgatttttctc |
30304113 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 30299098 - 30298907
Alignment:
| Q |
18 |
cttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaataaattcataaatatttttaacgacagtaattagtgtcacttaaact |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| ||||||||||||||||||| || | |
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| T |
30299098 |
cttgaattgaaatgtggcaacaaaagtgatccctaaaattaaattt-aacaagaaaattcattaatattttgaacaacagtaattagtgtcactttaatt |
30299000 |
T |
|
| Q |
118 |
aataataatcgtttaagataatttttgccctacctccctaatctccgcataattgaccaatatatccaagtctttaagctgtggatttttctc |
210 |
Q |
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|
||||||||| |||||||| |||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |
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| T |
30298999 |
aataataattttttaagatcatttttgctctacctccctaatctccgcataattaactaatatatccaagtctttaagttgtggatttttctc |
30298907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 30291671 - 30291486
Alignment:
| Q |
18 |
cttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaataaattcataaatatttttaacgacagtaattagtgtcacttaaact |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| || | |
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| T |
30291671 |
cttgaattgaagtgtggcaacaaaagtgatccctaaaattaaatttgaacaaataaattcgtaaatatttttaac-------attagtgtcactttaatt |
30291579 |
T |
|
| Q |
118 |
aataataatcgtttaagataatttttgccctacctccctaatctccgcataattgaccaatatatccaagtctttaagctgtggatttttctc |
210 |
Q |
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||||||| || |||||||| ||||||| |||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||||||| |
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| T |
30291578 |
aataatagtcttttaagattttttttgctttacctccctaatctccgcataattcactaatatatccaagtcttgaagttgtggatttttctc |
30291486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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