View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4316_low_4 (Length: 412)
Name: NF4316_low_4
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4316_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 26612811 - 26612434
Alignment:
| Q |
16 |
atatatatgtcttaaaacttcttcaattcagattaatcatccttaaatgacagtaaaaaactttgtatcaataataaaataaaaacattcaaataggatg |
115 |
Q |
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||||||||| |||||||||||||||| | |||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
26612811 |
atatatatgccttaaaacttcttcaacttagattaatcacccttaaatgacagtaaaat-ctttgtatcaataataaaagaaaaacattcaaataggatg |
26612713 |
T |
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| Q |
116 |
aatggaagatggtgaagatagattgaaaatccaaagtggtaagtaggctcaacaaaccacannnnnnn--gtggaaacaccaaccattatctaaatcatt |
213 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26612712 |
aatggaagat---------agattgaaaatccaaagtggtaagtaggctcaacaaaccacatttttttttgtggaaacaccaaccattatctaaatcatt |
26612622 |
T |
|
| Q |
214 |
gttcaggtttgtacatctaaatcttgtcaagtttatgcatctcgcgcgcacctcgtgcgacatcaaaagtatttattataatagctgtcaatnnnnnnnc |
313 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26612621 |
gttcaagtttgtacatctaaatcttgtcaagtttatgcatctcgcgcgcacctcgtgcgacatcaaaagtatttattataatagctgtcaataaaaaaac |
26612522 |
T |
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| Q |
314 |
aaaacattatcataatacccaacatatccnnnnnnncagtttcattgtaacatgttctttctcctaactctataaatacatatttcat |
401 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26612521 |
aaaacattatcataatacctaacatatcctttttttcagtttcattgtaacatgttctttctcctaactctataaatacatatttcat |
26612434 |
T |
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