View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4316_low_6 (Length: 322)
Name: NF4316_low_6
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4316_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 9137069 - 9137358
Alignment:
| Q |
21 |
tgtggagcgagcgataattcaactgctgaatttttctgatttatttgcaaatcgaaacccttcagcctggcatatgtttaaaatctttgacttgttcgcg |
120 |
Q |
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| T |
9137069 |
tgtggagcgagcgataattcaactgctgaatttttctgatttatttgcaaatcgaaacccttcagcctggcatatgtttaaaatccttgacttgttcgcg |
9137168 |
T |
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| Q |
121 |
acatatctttagattgagtgcatctgatcttccgtgcaatttgggaatctaatctttctaacatcagatgcggagttagatatggtgggctgatggcggc |
220 |
Q |
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| T |
9137169 |
acatatgtttagattgagtgcatctgatcttccgtgcaatttgggaatctaatctttcttacatcagatgcggagttagatatggtgggctgatggcggt |
9137268 |
T |
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| Q |
221 |
gttcatccaatgacctgcgagaccattgcctacatcgttttggctttctggtcaagacaaaacttggagaaaattttacaagaatatcct |
310 |
Q |
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| T |
9137269 |
gttcatccaatgacctgcgagaccattgcccacatcgttatggctttctggtcaagacaaaacttggagaaaattttacaagaatatcct |
9137358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 8040051 - 8040140
Alignment:
| Q |
34 |
ataattcaactgctgaatttttctgatttatttgcaaatcgaaacccttcagcctggcatatgtttaaaatctttgacttgttcgcgaca |
123 |
Q |
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| T |
8040051 |
ataattcaactgctgatttttgctgattcgtttgcaaattgaagccattcagcctggtatatgtttaaaatccttaacttgttcgagaca |
8040140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 8034688 - 8034766
Alignment:
| Q |
38 |
ttcaactgctgaatttttctgatttatttgcaaatcgaaacccttcagcctggcatatgtttaaaatctttgacttgtt |
116 |
Q |
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| T |
8034688 |
ttcaactgctgaattttgctgattcgtttgctaattgaagtcattcagcctggcctatgtttagaatccttaacttgtt |
8034766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 31402409 - 31402503
Alignment:
| Q |
29 |
gagcgataattcaactgctgaatttttctgatttatttgcaaatcgaaacccttcagcctggcatatgtttaaaatctttgacttgttcgcgaca |
123 |
Q |
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| T |
31402409 |
gagcgataattcaacttctgaattttgctgattcgtttgcaaatcgaagcccttcaccatggcgtatgtttaaaatcctcaacttgttcgagaca |
31402503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 302
Target Start/End: Original strand, 31402613 - 31402756
Alignment:
| Q |
158 |
aatttgggaatctaatctttctaacatcagatgcggagttagatatggtgggctgatggcggcgttcatccaatgacctgcgagaccattgcctacatcg |
257 |
Q |
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| T |
31402613 |
aatttgggaatatgatctttcttacaccatatgtggagttagat-tgttgggctgatggtggagtacatccaatgacatgtgaggccactagctccatcg |
31402711 |
T |
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| Q |
258 |
ttttggctttctggtcaagacaaaacttggagaaaattttacaag |
302 |
Q |
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| T |
31402712 |
tcgcggctttttggtcaagacaaaatctggagaaaattttacaag |
31402756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 31459124 - 31459205
Alignment:
| Q |
211 |
tgatggcggcgttcatccaatgacctgcgagaccattgcctacatcgttttggctttctggtcaagacaaaacttggagaaa |
292 |
Q |
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| T |
31459124 |
tgatggtggggttcatccaattacttgcgataccattgattacatcactatggctttttggtcaagacaaaacctagagaaa |
31459205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 31386655 - 31386699
Alignment:
| Q |
212 |
gatggcggcgttcatccaatgacctgcgagaccattgcctacatc |
256 |
Q |
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| T |
31386655 |
gatggtggggttcatccaatgacttgcgagaccattgactacatc |
31386699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 5478684 - 5478645
Alignment:
| Q |
33 |
gataattcaactgctgaatttttctgatttatttgcaaat |
72 |
Q |
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| T |
5478684 |
gataattcaactgctgaagttttctgattcatttgcaaat |
5478645 |
T |
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