View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4316_low_7 (Length: 307)
Name: NF4316_low_7
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4316_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 6823052 - 6823258
Alignment:
| Q |
10 |
gctgttcgagaaagagtcattcgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttga |
109 |
Q |
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| T |
6823052 |
gctgttagagaaagaatcattcgagctttcttggttgaagagaaaaagatagtcaagaatgttctgaagatccgaaagagaaaggaaaaacaagctttga |
6823151 |
T |
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| Q |
110 |
agggatgaattttatgaaaggagatacatatctttttggaggagttttaggtttgagtga-tatagtacaagcacaaaattcattagagttgtttccttt |
208 |
Q |
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| T |
6823152 |
agggatgaattttatgaaaggag--acatatcttttcagaggaattttaggtttgagtgattatagtacaagcacaaaatttattagagttgttcccttt |
6823249 |
T |
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| Q |
209 |
gttaatttt |
217 |
Q |
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|| |||||| |
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| T |
6823250 |
gtgaatttt |
6823258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 6855059 - 6854940
Alignment:
| Q |
168 |
gatatagtacaagcacaaaattcattagagttgtttcctttgttaattttgtataaataagggaagaaaatgatagagagaaccatctttgaacgttgta |
267 |
Q |
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| T |
6855059 |
gatatagtacaagcacaaaattcattagagttgtttcctttgttaattttgtataaataagggaagaaaatgatagagagaaccatctttgaacgttgta |
6854960 |
T |
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| Q |
268 |
gtatttcctaatgcgaaggg |
287 |
Q |
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| T |
6854959 |
gtatttcctaatgtgaaggg |
6854940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 6855171 - 6855057
Alignment:
| Q |
1 |
tctggtggtgctgttcgagaaagagtcattcgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaac |
100 |
Q |
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| T |
6855171 |
tctggtggtgctgttcgagaaagagtcattcgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaac |
6855072 |
T |
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| Q |
101 |
aagctttgaagggat |
115 |
Q |
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||||||||||||||| |
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| T |
6855071 |
aagctttgaagggat |
6855057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 24245690 - 24245859
Alignment:
| Q |
34 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttgaagggatgaattttatgaaaggaga |
133 |
Q |
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||||||||||||||| |||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||| | | ||| || ||| |||| |
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| T |
24245690 |
gctttcttggttgaagagcaaaagatcgtcaagaaagtcttgaagatccaaaagacaaaggaaaagcaagctttgaagggttaagtttcattaaacgaga |
24245789 |
T |
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| Q |
134 |
tacatatctttttggaggagttttaggtttgagtga-tatagtacaagcacaaaattcattagagttgtt |
202 |
Q |
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| T |
24245790 |
taaagatctttttggaggagttttaggtttgagtgattatagtaaaagcacaaaatttattagagctgtt |
24245859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 2418914 - 2418844
Alignment:
| Q |
34 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagc |
104 |
Q |
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|||||| | |||||| ||||||| ||||| ||||| |||||||||||||| || ||||| ||||| ||||| |
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| T |
2418914 |
gctttccttgttgaagagcaaaaaatagttaagaaagttttgaagatccagaaaacaaaagaaaagcaagc |
2418844 |
T |
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