View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4316_low_9 (Length: 288)
Name: NF4316_low_9
Description: NF4316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4316_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 3 - 272
Target Start/End: Original strand, 10758044 - 10758313
Alignment:
| Q |
3 |
agatgaatgcgatgtaaagtttgaagtatgttagtagtaatttgctttttattttatgatgatctgctataaaacttcagtggataccttgcagcagaag |
102 |
Q |
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| T |
10758044 |
agatgaatgcgatgtaaagtttgaagtatgttagtagtaatttgctttttattttatgatgatctgctataaaacttcagtggataccttgcagcagaag |
10758143 |
T |
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| Q |
103 |
agattttctataatcacgcgcgcggttaggatatcatggtcgatcgattaagattgaatagtcaaaattcaaactacgtgaatgttgaaccgttaactac |
202 |
Q |
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| T |
10758144 |
agattttctataatcacgcgcgcggttaggatatcatggtcgatcgattaagattgaatagtcaaaattcaaactacgtgaatgttgaaccgttaactac |
10758243 |
T |
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| Q |
203 |
atagaaatatccaaattccagtgtgaatgataatgtctcttttcgatagaaaactgtagttttctgtttt |
272 |
Q |
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| T |
10758244 |
atagaaatatccaaattccagtgtgaatgataatgtctcttttcgatagaaaactgtagttttctgtttt |
10758313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 272
Target Start/End: Original strand, 10745653 - 10745839
Alignment:
| Q |
72 |
taaaacttcagtggataccttgcagcagaagagattttctat-aatcacgcgcgcggttaggatatcatggtcgatcgattaa-gattgaatagtcaaaa |
169 |
Q |
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| T |
10745653 |
taaaactacagtggataccatgcagcggaagagatttttttttaatc----gtgcggttaggatatcatgatcgatcaattaaagatggaataatcaaaa |
10745748 |
T |
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| Q |
170 |
ttcaaactacgtgaatgttgaaccgttaactacatagaaatatccaaattccagtgtgaatgataatgtctcttttcgatagaaaactgtagttttctgt |
269 |
Q |
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| T |
10745749 |
ttcaaactacatgaatt-----------actacatacaaatatccaaatttcagtgtga-tgataatgtctcttttcgatagaaaattgtagttttatgt |
10745836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 10745519 - 10745588
Alignment:
| Q |
4 |
gatgaatgcgatgtaaagtttgaagtatgttagtagtaatttgctttttattttatgatgatctgctata |
73 |
Q |
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| T |
10745519 |
gatgaatgtgacgtaaagtttgaagtatggtagtagtaattttctttttattttatgatggtctgctata |
10745588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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