View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4317-Insertion-6 (Length: 135)
Name: NF4317-Insertion-6
Description: NF4317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4317-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 8e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 8e-56
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 12035124 - 12034990
Alignment:
| Q |
1 |
aatacaacacaacccaaaagcactaaacaagtttaatataccttcaaaatcgaaaaccaaagcaaaattgcaagattgaggcacnnnnnnngagatgaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12035124 |
aatacaacacaacccaaaagcactaaacaagtttaatatacctgcaaaatcgaaaaccaaagcaaaattgcaagattgaggcacaaaaaaagagatgaat |
12035025 |
T |
|
| Q |
101 |
aaaaccctagaaaaaggggtatatttatagtacca |
135 |
Q |
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| T |
12035024 |
aaaaccctagaaaaaggggtatatttatagtacca |
12034990 |
T |
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Target: chr6 (Bit Score: 67; Significance: 4e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 24284658 - 24284789
Alignment:
| Q |
6 |
aacacaacccaaaagcactaaacaagtttaatataccttcaaaatcgaaaaccaaagcaaaattgcaagattgaggc-acnnnnnnngagatgaataaaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
24284658 |
aacacaacccaaaagcactaaacaagtttaatatacctgcaaaatcaaaaaccaaagcgaaattgcaagattgaggcgtaaaacaatgagatgaataaaa |
24284757 |
T |
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| Q |
105 |
ccctag-aaaaaggggtatatttatagtacca |
135 |
Q |
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|||||| |||||||||| |||||||| ||||| |
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| T |
24284758 |
ccctagaaaaaaggggtgtatttatattacca |
24284789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 9e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 20167008 - 20167078
Alignment:
| Q |
6 |
aacacaacccaaaagcactaaacaagtttaatataccttcaaaatcgaaaaccaaagcaaaattgcaagat |
76 |
Q |
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| T |
20167008 |
aacacaacccaaaagcactaaacaagtttaatatacctgcaaaatcgaaaaacaaagcaaaattgcaagat |
20167078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 8065641 - 8065772
Alignment:
| Q |
6 |
aacacaacccaaaagcactaaacaagtttaatataccttcaaaatcgaaaaccaaagcaaaattgcaagattgaggcac-nnnnnnngagatgaataaaa |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| |||||||| || | ||||||||||||| |
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| T |
8065641 |
aacacaacccaaaagcactaaacaagtttaatatacctgcaaaatcaaaaaacaaagcaaaatttgaagattgatgcgcaaaaaaaagagatgaataaaa |
8065740 |
T |
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| Q |
105 |
ccctag-aaaaaggggtatatttatagtacca |
135 |
Q |
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|||||| ||||||| ||||||||||| ||||| |
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| T |
8065741 |
ccctagaaaaaaggagtatatttatattacca |
8065772 |
T |
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