View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4317_high_4 (Length: 328)
Name: NF4317_high_4
Description: NF4317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4317_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 8472680 - 8473002
Alignment:
| Q |
1 |
gaaatgcatgaatcaatcaaggtcacgctgtaataccatgctgtaaggtgcaaaatccacaccttcagctttaccattccaaattaaagttgtcttgcgt |
100 |
Q |
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| T |
8472680 |
gaaatgcatgaatcaatcaaggtcacgctgtaataccatgctgtaaggtgcaaaatccacaccttcagctttaccattccaaattaaagttgtcttgcgt |
8472779 |
T |
|
| Q |
101 |
agtataggataattgattaaaaattatattattttgatatactacctttttagcttttgatccatta-----------tactattagattaaagtataag |
189 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8472780 |
agtataggataattgattaataattatattattttgatatactacctttttagcttttgatccattataaatgagttgtactattagattaaagtataag |
8472879 |
T |
|
| Q |
190 |
aagaattgttccttgcgtcatcacaccctcaggctttagtcacctactaattacgcatgaaataaccaagagaatgagtctaaattcaactgatctacaa |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8472880 |
aagaattgttccttgcgtcatcacaccctcaggctttagtcacctactaattacgcatgaaataaccaagagaatgaatctaaattcaactgatctacaa |
8472979 |
T |
|
| Q |
290 |
aatgttccttaactataccaaat |
312 |
Q |
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||||||||||||||||||||||| |
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| T |
8472980 |
aatgttccttaactataccaaat |
8473002 |
T |
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