View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4317_high_6 (Length: 254)

Name: NF4317_high_6
Description: NF4317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4317_high_6
NF4317_high_6
[»] chr6 (5 HSPs)
chr6 (17-247)||(23098136-23098368)
chr6 (165-244)||(18176241-18176320)
chr6 (165-244)||(18203675-18203754)
chr6 (165-244)||(18223481-18223560)
chr6 (148-188)||(19382709-19382749)
[»] chr1 (2 HSPs)
chr1 (148-244)||(22045971-22046067)
chr1 (148-234)||(22033614-22033700)
[»] scaffold0422 (1 HSPs)
scaffold0422 (134-247)||(10042-10155)
[»] chr5 (1 HSPs)
chr5 (148-238)||(18535461-18535551)
[»] chr2 (1 HSPs)
chr2 (134-247)||(29406341-29406454)
[»] chr3 (1 HSPs)
chr3 (134-190)||(46124319-46124375)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 23098136 - 23098368
Alignment:
Q  17 aaaatcgatcttgataaaaa--tgtaagatgatatatgtccactttccatacaaatacactactgagttttgatcaatcaacagtaaaaatgattgtgcc 114  Q
    ||||||||||||||||||||  | ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  23098136 aaaatcgatcttgataaaaaaatataaaatgatatatgtccattttccatacaaatacactactgagttttgatcaatcaacattaaaaatgattgtgct 23098235  T
Q  115 cgtcnnnnnnngtcaaagaaaaacccatatttggattaatcaacactttgaatatgttgtagtaatgttaatcatacttttggcaccgtaccaaattgtg 214  Q
    |||        |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23098236 cgtaaaaaaaagtcaaagaaaaacccatatttggattaatcaacaatttcaatatgttgtagtaacgttaatcatacttttggcaccgtaccaaattgtg 23098335  T
Q  215 tcataatacttgatcgttcacatcttcatctca 247  Q
    |||||||||||||||||||||||||||||||||    
T  23098336 tcataatacttgatcgttcacatcttcatctca 23098368  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 18176241 - 18176320
Alignment:
Q  165 aatatgttgtagtaatgttaatcatacttttggcaccgtaccaaattgtgtcataatacttgatcgttcacatcttcatc 244  Q
    ||||| |||||  ||| ||| ||||| ||||||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  18176241 aatatattgtataaatattagtcatatttttggcattgtaccaaattgtgtcataatacttgatcattcacatcttcatc 18176320  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 18203754 - 18203675
Alignment:
Q  165 aatatgttgtagtaatgttaatcatacttttggcaccgtaccaaattgtgtcataatacttgatcgttcacatcttcatc 244  Q
    ||||| |||||  ||| ||| ||||| ||||||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  18203754 aatatattgtataaatattagtcatatttttggcattgtaccaaattgtgtcataatacttgatcattcacatcttcatc 18203675  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 18223560 - 18223481
Alignment:
Q  165 aatatgttgtagtaatgttaatcatacttttggcaccgtaccaaattgtgtcataatacttgatcgttcacatcttcatc 244  Q
    ||||| |||||  ||| ||| ||||| ||||||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  18223560 aatatattgtataaatattagtcatatttttggcattgtaccaaattgtgtcataatacttgatcattcacatcttcatc 18223481  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 19382749 - 19382709
Alignment:
Q  148 gattaatcaacactttgaatatgttgtagtaatgttaatca 188  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  19382749 gattaatcaacactttcaatatgttgtagtaatattaatca 19382709  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 22045971 - 22046067
Alignment:
Q  148 gattaatcaacactttgaatatgttgtagtaatgttaatcatacttttggcaccgtaccaaattgtgtcataatacttgatcgttcacatcttcatc 244  Q
    ||||||||||||  || ||||| |||||  ||| ||||||||| ||||||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  22045971 gattaatcaacagattcaatatattgtataaatattaatcatatttttggcattgtaccaaattgtgtcataatacttgatcattcacatcttcatc 22046067  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 22033614 - 22033700
Alignment:
Q  148 gattaatcaacactttgaatatgttgtagtaatgttaatcatacttttggcaccgtaccaaattgtgtcataatacttgatcgttca 234  Q
    ||||||||||||  || ||||| |||||  ||| ||| ||||| ||||||||  |||||||||||||||||| ||||||||| ||||    
T  22033614 gattaatcaacagattcaatatattgtataaatattagtcatatttttggcattgtaccaaattgtgtcatagtacttgatcattca 22033700  T

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Target: scaffold0422 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 10155 - 10042
Alignment:
Q  134 aaaacccatatttggattaatcaacactttgaatatgttgtagtaatgttaatcatacttttggcaccgtaccaaattgtgtcataatacttgatcgttc 233  Q
    ||||| ||||||  ||||||||||||||||  |||| || ||  ||||||| ||||||||||| ||  |||||| ||| ||||||||||||||||| |||    
T  10155 aaaactcatattacgattaatcaacactttcgatatattttataaatgttagtcatacttttgacattgtaccagattctgtcataatacttgatcattc 10056  T
Q  234 acatcttcatctca 247  Q
    ||||||||||||||    
T  10055 acatcttcatctca 10042  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 18535551 - 18535461
Alignment:
Q  148 gattaatcaacactttgaatatgttgtagtaatgttaatcatacttttggcaccgtaccaaattgtgtcataatacttgatcgttcacatc 238  Q
    |||||||||| ||||| |||||||| ||||||||||||||||  ||||| |||  ||| ||||||||||||||||||| ||| ||||||||    
T  18535551 gattaatcaaaactttcaatatgttttagtaatgttaatcatttttttgacactatacaaaattgtgtcataatacttcatcattcacatc 18535461  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 29406454 - 29406341
Alignment:
Q  134 aaaacccatatttggattaatcaacactttgaatatgttgtagtaatgttaatcatacttttggcaccgtaccaaattgtgtcataatacttgatcgttc 233  Q
    ||||| ||||||  ||||||||||||||||  |||| || ||  ||||||| |||| |||||| ||  |||||| ||| ||||||||||||||||| |||    
T  29406454 aaaactcatattacgattaatcaacactttcgatatattctataaatgttagtcatgcttttgacattgtaccagattatgtcataatacttgatcattc 29406355  T
Q  234 acatcttcatctca 247  Q
    ||||||||||||||    
T  29406354 acatcttcatctca 29406341  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 46124319 - 46124375
Alignment:
Q  134 aaaacccatatttggattaatcaacactttgaatatgttgtagtaatgttaatcata 190  Q
    ||||| ||||||  |||||||||||||||| |||||||||||||||| |||||||||    
T  46124319 aaaactcatattgtgattaatcaacactttcaatatgttgtagtaatattaatcata 46124375  T

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