View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4317_low_1 (Length: 433)

Name: NF4317_low_1
Description: NF4317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4317_low_1
NF4317_low_1
[»] chr8 (14 HSPs)
chr8 (211-418)||(13032832-13033039)
chr8 (32-165)||(13033076-13033209)
chr8 (33-165)||(15214904-15215036)
chr8 (35-165)||(15066407-15066537)
chr8 (303-395)||(15051818-15051910)
chr8 (164-208)||(15066343-15066387)
chr8 (164-208)||(15076296-15076340)
chr8 (249-292)||(15051994-15052037)
chr8 (164-208)||(15052138-15052182)
chr8 (249-289)||(15066202-15066242)
chr8 (249-285)||(15076159-15076195)
chr8 (266-296)||(15076095-15076125)
chr8 (131-165)||(15076360-15076394)
chr8 (164-208)||(15215056-15215100)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 211 - 418
Target Start/End: Complemental strand, 13033039 - 13032832
Alignment:
Q  211 tgttgaagccattggaggattttgttcctgaccagctgttatagcacgataccagtattcattcaataattttaattagattgcaataaacaataattaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13033039 tgttgaagccattggaggattttgttcctgaccagctgttatagcacgataccagtattcattcaataattttaattagattgcaataaacaatacttaa 13032940  T
Q  311 ttatgattgcaagattaatttcgctgtatactcatgaagtcaactttctgttagtaagattaacaatccaatcaacaacgatataatataccaagaaaaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13032939 ttatgattgcaagattaatttcgctgtatactcatgaagtcaactttctgttagtaagattaacaatccaatcaacaacgatataatataccaagaaaaa 13032840  T
Q  411 gacaaaac 418  Q
    ||||||||    
T  13032839 gacaaaac 13032832  T

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Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 13033209 - 13033076
Alignment:
Q  32 ttgtctttggcatgaaatttattttgaaaagtgttgacagattggataagatatgatggacaccaaaatccatgnnnnnnntacatatattcagtctcac 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  13033209 ttgtctttggcatgaaatttattttgaaaagtgttgacagattggataagatatgatggacaccaaaatccatgaaaaaaatacatatattcagtctcac 13033110  T
Q  132 acccattttctctaggaagtgacaagattaggtt 165  Q
    ||||||||||||||||||||||||||||||||||    
T  13033109 acccattttctctaggaagtgacaagattaggtt 13033076  T

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Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 165
Target Start/End: Original strand, 15214904 - 15215036
Alignment:
Q  33 tgtctttggcatgaaatttattttgaaaagtgttgacagattggataagatatgatggacaccaaaatccatgnnnnnnntacatatattcagtctcaca 132  Q
    ||||||| |||||||| ||||||||||||| ||| |||||||| ||||||  |||||||||||||||||||||       |||||||||| |||||||||    
T  15214904 tgtctttagcatgaaaattattttgaaaagagttcacagattgaataagagttgatggacaccaaaatccatgaaaaaaatacatatattgagtctcaca 15215003  T
Q  133 cccattttctctaggaagtgacaagattaggtt 165  Q
    |||||||||||||||||||||||||||||||||    
T  15215004 cccattttctctaggaagtgacaagattaggtt 15215036  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 15066537 - 15066407
Alignment:
Q  35 tctttggcatgaaatttattttgaaaagtgttgacagattggataagatatgatggacaccaaaatccatgnnnnnnntacatatattcagtctcacacc 134  Q
    |||||||||||||| ||||||||||||| ||| |||||||||||||||  |||||||||||||||||||||       || | ||||| ||| ||||| |    
T  15066537 tctttggcatgaaaattattttgaaaagagttcacagattggataagagttgatggacaccaaaatccatgataaaaataaaaatattgagtatcacatc 15066438  T
Q  135 cattttctctaggaagtgacaagattaggtt 165  Q
    |||||||||||||||| ||||||||||||||    
T  15066437 cattttctctaggaagagacaagattaggtt 15066407  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 395
Target Start/End: Complemental strand, 15051910 - 15051818
Alignment:
Q  303 ataattaattatgattgcaagattaatttcgctgtatactcatgaagtcaactttctgttagtaagattaacaatccaatcaacaacgatata 395  Q
    ||||||| |||||||| || ||||||||||| || |||||  |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  15051910 ataattatttatgattacatgattaatttcgttgcatactattgaagtcaactttctgttagtaagattaacaatctaatcaataacgatata 15051818  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 15066387 - 15066343
Alignment:
Q  164 ttgttttcttcgctaattgtttcttgtccatcccttgattcgtct 208  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  15066387 ttgttttcttcgctaattgtttcttgtccatcccttgattggtct 15066343  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 15076340 - 15076296
Alignment:
Q  164 ttgttttcttcgctaattgtttcttgtccatcccttgattcgtct 208  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  15076340 ttgttttcttcgctaattgtttcttgtccatcccttgattggtct 15076296  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 15052037 - 15051994
Alignment:
Q  249 ttatagcacgataccagtattcattcaataattttaattagatt 292  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  15052037 ttatagcacgataccagtattcattcaataattttaactagatt 15051994  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 15052182 - 15052138
Alignment:
Q  164 ttgttttcttcgctaattgtttcttgtccatcccttgattcgtct 208  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||    
T  15052182 ttgttttcttcgctaattttttcttgtccatcccttgattggtct 15052138  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 15066242 - 15066202
Alignment:
Q  249 ttatagcacgataccagtattcattcaataattttaattag 289  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  15066242 ttatagcacgatgccagtactcattcaataattttaattag 15066202  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 15076195 - 15076159
Alignment:
Q  249 ttatagcacgataccagtattcattcaataattttaa 285  Q
    |||||||| ||||||||||||||||||||||||||||    
T  15076195 ttatagcatgataccagtattcattcaataattttaa 15076159  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 296
Target Start/End: Complemental strand, 15076125 - 15076095
Alignment:
Q  266 tattcattcaataattttaattagattgcaa 296  Q
    |||||||||||||||||||||||||||||||    
T  15076125 tattcattcaataattttaattagattgcaa 15076095  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 15076394 - 15076360
Alignment:
Q  131 cacccattttctctaggaagtgacaagattaggtt 165  Q
    |||||||||||| ||||||||||||||||||||||    
T  15076394 cacccattttctttaggaagtgacaagattaggtt 15076360  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 15215056 - 15215100
Alignment:
Q  164 ttgttttcttcgctaattgtttcttgtccatcccttgattcgtct 208  Q
    |||||| ||| |||| |||||||||||||||||||||||| ||||    
T  15215056 ttgtttactttgctagttgtttcttgtccatcccttgattggtct 15215100  T

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