View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4317_low_2 (Length: 362)
Name: NF4317_low_2
Description: NF4317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4317_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 18037121 - 18037018
Alignment:
| Q |
179 |
ctttgttcattttcccatttgtaccgatgataataagaaaacacataaacaaatatgaaggatcacaattttaactgaaaagtgaattttacacattcaa |
278 |
Q |
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| T |
18037121 |
ctttgttccttttcccatttgtatcgatgataataagaaaacacataaacaaatatgaaggatcactattttaactgaaaagtgaattttacacattcaa |
18037022 |
T |
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| Q |
279 |
attt |
282 |
Q |
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|||| |
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| T |
18037021 |
attt |
18037018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 18036023 - 18035985
Alignment:
| Q |
310 |
tggaatgcacacatttctcaaaatataaaaccaactttc |
348 |
Q |
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| T |
18036023 |
tggaatgcacacatttctcaaaatataaaaccaactttc |
18035985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 31958031 - 31958145
Alignment:
| Q |
33 |
aaatgtttgtgcatattatattgctaagtttggagatggcaatcacgacgcgttttggtctattgcgttgcctccgaatggaattctcctccaactgcta |
132 |
Q |
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| T |
31958031 |
aaatatttgtgcagattatattgctaagcttggagctggcagtcaagacgcgttttggtc-atcgcggagcatcaagatgcaattctcctccacctgcta |
31958129 |
T |
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| Q |
133 |
gctgatgctagtggga |
148 |
Q |
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| T |
31958130 |
ggcgatgctagtggga |
31958145 |
T |
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