View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4318-Insertion-1 (Length: 306)
Name: NF4318-Insertion-1
Description: NF4318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4318-Insertion-1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 139; Significance: 9e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 2322983 - 2323140
Alignment:
| Q |
5 |
aaaagactacaaggaaaatgttcatatacaagcaatagaagaaatctgctctaacagattcagttagagattacagactatctaattaatcaaactccaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2322983 |
aaaagactacaaggaaaatgttcatatacaagcaatagaagaaatctgctctaacagattcagttagagattacagactatctaattaatcaaactccaa |
2323082 |
T |
|
| Q |
105 |
gtgtgtaacaattttagaagaacatttgtgcggtcacaaccctaaatatanttcattt |
162 |
Q |
| |
|
|||||||| |||||||||| |||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
2323083 |
gtgtgtaataattttagaacaacatttgtgtggtcacaatcctaaatataattcattt |
2323140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 5 - 300
Target Start/End: Original strand, 2311933 - 2312236
Alignment:
| Q |
5 |
aaaagactacaaggaaaatgttcatatacaagcaatagaagaaatctgctctaacagattcagttagagattacaga--------ctatctaattaatca |
96 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2311933 |
aaaagacttcaaggaaaatgctcatatacaagcaatagaagaaatctgctataacatattcagttagagattacagttcaaaagcctatctaattaatca |
2312032 |
T |
|
| Q |
97 |
aactccaagtgtgtaacaattttagaagaacatttgtgcggtcacaaccctaaatatanttcatttgcaccctcacaaancttgaaaaaggtataataga |
196 |
Q |
| |
|
| |||||||||||||||| ||||||||||||| || | ||||| ||||| ||||||| |||||| |||| ||||||| ||||||||||||| |||||| |
|
|
| T |
2312033 |
a-ctccaagtgtgtaacagttttagaagaacacttctatggtcaaaaccccaaatataattcattcgcacattcacaaaacttgaaaaaggtacaataga |
2312131 |
T |
|
| Q |
197 |
aagcaattgaataaatcct--caatttttgttttaaataatgtttattttttacataattaaatgaaatgtattgttacgtgtgcgtgactacattattt |
294 |
Q |
| |
|
|| |||||||||||||||| || ||| || ||||||| ||||||| |||||||||||| ||||||||||||| ||||| ||| | |||| |||| |
|
|
| T |
2312132 |
aaacaattgaataaatcctaaaaaaaattg-aatatataatgtgtatttttgacataattaaataaaatgtattgttatgtgtgtgtggccacataattt |
2312230 |
T |
|
| Q |
295 |
ttattt |
300 |
Q |
| |
|
|||||| |
|
|
| T |
2312231 |
ttattt |
2312236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 5 - 300
Target Start/End: Original strand, 2296119 - 2296422
Alignment:
| Q |
5 |
aaaagactacaaggaaaatgttcatatacaagcaatagaagaaatctgctctaacagattcagttagagattacagac--------tatctaattaatca |
96 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
2296119 |
aaaagacttcaaggaaaatgctcatatacaagcaatagaagaaatctgctataacatattcagttagagattacagttcaaaagcttatctaattaatca |
2296218 |
T |
|
| Q |
97 |
aactccaagtgtgtaacaattttagaagaacatttgtgcggtcacaaccctaaatatanttcatttgcaccctcacaaancttgaaaaaggtataataga |
196 |
Q |
| |
|
| |||||||||||||||| ||||||||||||| || | ||||| ||||| ||||||| |||||| |||| | ||||| ||||||||||||| |||||| |
|
|
| T |
2296219 |
a-ctccaagtgtgtaacagttttagaagaacacttctatggtcaaaaccccaaatataattcattcgcacatttacaaaacttgaaaaaggtacaataga |
2296317 |
T |
|
| Q |
197 |
aagcaattgaataaatcct--caatttttgttttaaataatgtttattttttacataattaaatgaaatgtattgttacgtgtgcgtgactacattattt |
294 |
Q |
| |
|
| |||||||||||||||| || ||| || ||||||| ||||||| |||||||||||| ||||||||||||| ||||| ||| | |||| |||| |
|
|
| T |
2296318 |
agacaattgaataaatcctaaaaaaaattg-aatatataatgtgtatttttgacataattaaataaaatgtattgttatgtgtgtgtggccacataattt |
2296416 |
T |
|
| Q |
295 |
ttattt |
300 |
Q |
| |
|
|||||| |
|
|
| T |
2296417 |
ttattt |
2296422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 2335185 - 2335254
Alignment:
| Q |
97 |
aactccaagtgtgtaacaattttagaagaacatttgtgcggtcacaaccctaaatatanttcatttgcac |
166 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | || ||| | ||||||||||||| ||||||||||| |
|
|
| T |
2335185 |
aactccaagtgtgtaacaattttagaggaacatatatgtggttataaccctaaatataattcatttgcac |
2335254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 32340151 - 32340075
Alignment:
| Q |
124 |
gaacatttgtgcggtcacaaccctaaatatanttcattt--gcaccctcacaaancttgaaaaaggtataatagaaa |
198 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||| ||||||||||| | || |||||| || |||||||| |
|
|
| T |
32340151 |
gaacacttgtgcggtcacaaccctaaatataattcatttgagcaccctcacacaatttaaaaaagatacaatagaaa |
32340075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 4210516 - 4210442
Alignment:
| Q |
124 |
gaacatttgtgcggtcacaaccctaaatatanttcatttgca--ccctcacaaancttgaaaaaggtataataga |
196 |
Q |
| |
|
||||||||||| |||||||||| |||||| |||||||| | | |||||||| ||||||||||||| |||||| |
|
|
| T |
4210516 |
gaacatttgtgtggtcacaacctcgaatataattcatttgaagacactcacaaaacttgaaaaaggtacaataga |
4210442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 27511645 - 27511604
Alignment:
| Q |
227 |
ttaaataatgtttattttttacataattaaatgaaatgtatt |
268 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
27511645 |
ttaaataatatttattttttaaataattaaataaaatgtatt |
27511604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 21992707 - 21992784
Alignment:
| Q |
135 |
cggtcacaaccctaaatatanttcattt--gcaccctcacaaancttgaaaaaggtataatagaaagcaattgaataa |
210 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||| |||||| | ||| ||||||||| |||| ||| ||||| ||||| |
|
|
| T |
21992707 |
cggtcacaaccccaaatataattcatttaggcacactcacacaacttaaaaaaggtacaatataaaacaatttaataa |
21992784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 21992780 - 21992828
Alignment:
| Q |
230 |
aataatgtttattttttacataattaaatgaaatgtattgttacgtgtg |
278 |
Q |
| |
|
|||||||| ||||||| || ||||||||| ||||||||||||| ||||| |
|
|
| T |
21992780 |
aataatgtgtatttttcacttaattaaataaaatgtattgttatgtgtg |
21992828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University