View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4318-Insertion-12 (Length: 273)
Name: NF4318-Insertion-12
Description: NF4318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4318-Insertion-12 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 36890983 - 36890725
Alignment:
| Q |
1 |
gcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattcttctttgttcagatgtgtgcttag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36890983 |
gcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattcttctttgttcagatgtgtgcttag |
36890884 |
T |
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| Q |
101 |
gaaatcatagtaatgtactactatcacagccaaatctgtttcatcagataacacatatgtataaccaattatagaaca--atatgtcaatatctgtttct |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
36890883 |
gaaatcatagtaatgtactactatcacagccaaatctgtttcatcacataacacatatgtataaccaattatagcacaatatatgtcaatatctgtttct |
36890784 |
T |
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| Q |
199 |
accnnnnnnncagaagt-aaatatatgtgtcatccaaaaaagctagcagcgcagcttgt |
256 |
Q |
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||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
36890783 |
acctaaaaaacagaagtaaaatatatgtgtcatccgaaaaagctagcggcgcagcttgt |
36890725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 36877916 - 36877777
Alignment:
| Q |
1 |
gcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattcttctttgttcagatgtgtgcttag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
36877916 |
gcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagctgcaaggactttgagaggagttgatccttctttgttcagatgtgtgctgag |
36877817 |
T |
|
| Q |
101 |
gaaatcatagtaatgtactactatcacagccaaatctgtt |
140 |
Q |
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| T |
36877816 |
gtaatcatattgatgtactattatcacagccaaatctgtt |
36877777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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