View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4318-Insertion-18 (Length: 51)
Name: NF4318-Insertion-18
Description: NF4318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4318-Insertion-18 |
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Alignment Details
Target: chr3 (Bit Score: 50; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-20
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 36867538 - 36867489
Alignment:
| Q |
1 |
gtaacaactcttcatgcacactccaatctggacatgtaagcggaaaagat |
50 |
Q |
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| T |
36867538 |
gtaacaactcttcatgcacactccaatctggacatgtaagcggaaaagat |
36867489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 36861793 - 36861751
Alignment:
| Q |
8 |
ctcttcatgcacactccaatctggacatgtaagcggaaaagat |
50 |
Q |
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| T |
36861793 |
ctcttcatgcgcactccaatctggacatgtaaggggaaaagat |
36861751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 36851290 - 36851259
Alignment:
| Q |
19 |
cactccaatctggacatgtaagcggaaaagat |
50 |
Q |
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| T |
36851290 |
cactccaatctggagatgtaagcggaaaagat |
36851259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 37371683 - 37371714
Alignment:
| Q |
19 |
cactccaatctggacatgtaagcggaaaagat |
50 |
Q |
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| T |
37371683 |
cactccaatctggacatataagcggaaaagat |
37371714 |
T |
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