View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4318-Insertion-2 (Length: 166)

Name: NF4318-Insertion-2
Description: NF4318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4318-Insertion-2
NF4318-Insertion-2
[»] chr6 (6 HSPs)
chr6 (11-166)||(34882875-34883029)
chr6 (86-142)||(9024166-9024222)
chr6 (76-114)||(29711265-29711303)
chr6 (79-115)||(13211298-13211334)
chr6 (80-116)||(15443702-15443738)
chr6 (79-110)||(2140503-2140534)
[»] chr5 (7 HSPs)
chr5 (86-142)||(41558644-41558700)
chr5 (69-115)||(11596472-11596518)
chr5 (80-144)||(23287336-23287401)
chr5 (78-110)||(28296333-28296365)
chr5 (81-116)||(22423828-22423863)
chr5 (78-116)||(38749579-38749617)
chr5 (79-137)||(40211962-40212020)
[»] chr4 (9 HSPs)
chr4 (78-142)||(18513231-18513295)
chr4 (80-122)||(23915136-23915178)
chr4 (78-115)||(14465311-14465348)
chr4 (79-115)||(5654608-5654644)
chr4 (79-115)||(10546154-10546190)
chr4 (79-110)||(43188618-43188649)
chr4 (78-108)||(7012071-7012101)
chr4 (87-122)||(11135304-11135339)
chr4 (80-114)||(25390904-25390938)
[»] chr3 (3 HSPs)
chr3 (78-141)||(7948963-7949027)
chr3 (78-110)||(9210847-9210879)
chr3 (87-115)||(15864259-15864287)
[»] chr8 (7 HSPs)
chr8 (78-113)||(14230063-14230098)
chr8 (79-115)||(30068045-30068081)
chr8 (80-116)||(34201062-34201098)
chr8 (81-116)||(8798847-8798882)
chr8 (76-115)||(9936817-9936856)
chr8 (81-115)||(29198496-29198530)
chr8 (76-110)||(34739083-34739117)
[»] chr2 (7 HSPs)
chr2 (78-116)||(40681987-40682025)
chr2 (78-115)||(18570977-18571014)
chr2 (79-110)||(30563415-30563446)
chr2 (76-110)||(2073945-2073979)
chr2 (78-108)||(10535783-10535813)
chr2 (86-141)||(13204038-13204093)
chr2 (80-122)||(44605149-44605191)
[»] chr7 (7 HSPs)
chr7 (78-115)||(2525861-2525898)
chr7 (78-115)||(35238201-35238238)
chr7 (78-115)||(38134423-38134460)
chr7 (79-115)||(44172907-44172943)
chr7 (87-115)||(18678162-18678190)
chr7 (82-136)||(12843171-12843225)
chr7 (80-114)||(41099759-41099793)
[»] chr1 (6 HSPs)
chr1 (79-116)||(40747789-40747826)
chr1 (79-115)||(11571591-11571627)
chr1 (81-116)||(1262892-1262927)
chr1 (80-115)||(3921674-3921709)
chr1 (78-108)||(42325565-42325595)
chr1 (79-113)||(48785283-48785317)
[»] scaffold0037 (1 HSPs)
scaffold0037 (76-116)||(102908-102948)
[»] scaffold0571 (1 HSPs)
scaffold0571 (79-110)||(7696-7727)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 2e-69; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 34882875 - 34883029
Alignment:
Q  11 tcgtgtctatatagaatattggaatatgcaatgaaaagatgataccgaagacgaacaccgtccatatcgataatnatttgagaaaatgacataattcaat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  34882875 tcgtgtctatatagaatattggaatatgcaatgaaaagatgataccgaagacgaacaccgtccatatcgataataatttgagaaaatga-gtaattcaat 34882973  T
Q  111 ataattccatgtatcagagtcgtgtcggacactgaaacatgccatatagacatacc 166  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  34882974 ataattccatgcatcagagtcgtgtcggacactggaacatgccatatagacatacc 34883029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 9024222 - 9024166
Alignment:
Q  86 atttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcggacac 142  Q
    ||||||||||||||||||||||||| ||||   |||| |||| ||||||||||||||    
T  9024222 atttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgtcggacac 9024166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 29711265 - 29711303
Alignment:
Q  76 atcgataatnatttgagaaaatgacataattcaatataa 114  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  29711265 atcgataataatttgagaaaatgacataattcattataa 29711303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 13211334 - 13211298
Alignment:
Q  79 gataatnatttgagaaaatgacataattcaatataat 115  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  13211334 gataataatttgagaaaatgacataatttaatataat 13211298  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 15443702 - 15443738
Alignment:
Q  80 ataatnatttgagaaaatgacataattcaatataatt 116  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  15443702 ataataatttgagaaaataacataattcaatataatt 15443738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 110
Target Start/End: Complemental strand, 2140534 - 2140503
Alignment:
Q  79 gataatnatttgagaaaatgacataattcaat 110  Q
    |||||| |||||||||||||||||||||||||    
T  2140534 gataataatttgagaaaatgacataattcaat 2140503  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 41558700 - 41558644
Alignment:
Q  86 atttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcggacac 142  Q
    ||||||||||||||||||||||||| |||||  |||| |||| ||||||||||||||    
T  41558700 atttgagaaaatgacataattcaatgtaattaaatgtgtcagtgtcgtgtcggacac 41558644  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 11596518 - 11596472
Alignment:
Q  69 cgtccatatcgataatnatttgagaaaatgacataattcaatataat 115  Q
    |||| ||| ||||||| ||||||||||||||||||||||||| ||||    
T  11596518 cgtcgataccgataataatttgagaaaatgacataattcaatgtaat 11596472  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 23287401 - 23287336
Alignment:
Q  80 ataatnatttgagaaaatgacataattcaatataattccatgtatcagagtc-gtgtcggacactg 144  Q
    ||||| ||||  |||||||||||||||||||||||||  |||| |||| ||| |||||||||||||    
T  23287401 ataataatttaggaaaatgacataattcaatataattatatgtgtcagtgtcagtgtcggacactg 23287336  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 28296333 - 28296365
Alignment:
Q  78 cgataatnatttgagaaaatgacataattcaat 110  Q
    ||||||| |||||||||||||||||||||||||    
T  28296333 cgataataatttgagaaaatgacataattcaat 28296365  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 116
Target Start/End: Complemental strand, 22423863 - 22423828
Alignment:
Q  81 taatnatttgagaaaatgacataattcaatataatt 116  Q
    |||| |||||||||||| ||||||||||||||||||    
T  22423863 taataatttgagaaaatcacataattcaatataatt 22423828  T

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Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 38749617 - 38749579
Alignment:
Q  78 cgataatnatttgagaaaatgacataattcaatataatt 116  Q
    ||||||| |||||| |||||||||||||||||| |||||    
T  38749617 cgataataatttgaaaaaatgacataattcaatgtaatt 38749579  T

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Target: chr5; HSP #7
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 40211962 - 40212020
Alignment:
Q  79 gataatnatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcg 137  Q
    |||||| | |||||||||| |||||||||||||||||   ||||||| | |||||||||    
T  40211962 gataataaattgagaaaattacataattcaatataatcatatgtatcggtgtcgtgtcg 40212020  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 18513295 - 18513231
Alignment:
Q  78 cgataatnatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcggacac 142  Q
    ||||||| ||||||||||||||||||||||||| ||||   |||| |||| || |||||||||||    
T  18513295 cgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcggacac 18513231  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 23915136 - 23915178
Alignment:
Q  80 ataatnatttgagaaaatgacataattcaatataattccatgt 122  Q
    ||||| |||||||||||| |||||||||||||||||| |||||    
T  23915136 ataatcatttgagaaaataacataattcaatataattacatgt 23915178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 14465348 - 14465311
Alignment:
Q  78 cgataatnatttgagaaaatgacataattcaatataat 115  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  14465348 cgataataatttgagaaaatgacataattcaatttaat 14465311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 5654644 - 5654608
Alignment:
Q  79 gataatnatttgagaaaatgacataattcaatataat 115  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  5654644 gataataatttgagaaaatgacataattcaatgtaat 5654608  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 10546154 - 10546190
Alignment:
Q  79 gataatnatttgagaaaatgacataattcaatataat 115  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  10546154 gataataatttgagaaaatgacataattcaatgtaat 10546190  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 110
Target Start/End: Original strand, 43188618 - 43188649
Alignment:
Q  79 gataatnatttgagaaaatgacataattcaat 110  Q
    |||||| |||||||||||||||||||||||||    
T  43188618 gataataatttgagaaaatgacataattcaat 43188649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 108
Target Start/End: Original strand, 7012071 - 7012101
Alignment:
Q  78 cgataatnatttgagaaaatgacataattca 108  Q
    ||||||| |||||||||||||||||||||||    
T  7012071 cgataataatttgagaaaatgacataattca 7012101  T

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Target: chr4; HSP #8
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 11135339 - 11135304
Alignment:
Q  87 tttgagaaaatgacataattcaatataattccatgt 122  Q
    ||||||||||| |||||||||||||||||| |||||    
T  11135339 tttgagaaaattacataattcaatataattacatgt 11135304  T

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Target: chr4; HSP #9
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 25390938 - 25390904
Alignment:
Q  80 ataatnatttgagaaaatgacataattcaatataa 114  Q
    ||||| |||| ||||||||||||||||||||||||    
T  25390938 ataataattttagaaaatgacataattcaatataa 25390904  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 7948963 - 7949027
Alignment:
Q  78 cgataatnatttgagaaaa-tgacataattcaatataattccatgtatcagagtcgtgtcggaca 141  Q
    |||||||  |||||||||| |||||||||||||| |||||  |||| ||||||||||||||||||    
T  7948963 cgataatagtttgagaaaaatgacataattcaatgtaattgtatgtgtcagagtcgtgtcggaca 7949027  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 9210879 - 9210847
Alignment:
Q  78 cgataatnatttgagaaaatgacataattcaat 110  Q
    ||||||| |||||||||||||||||||||||||    
T  9210879 cgataataatttgagaaaatgacataattcaat 9210847  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 15864259 - 15864287
Alignment:
Q  87 tttgagaaaatgacataattcaatataat 115  Q
    |||||||||||||||||||||||||||||    
T  15864259 tttgagaaaatgacataattcaatataat 15864287  T

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Target: chr8 (Bit Score: 33; Significance: 0.0000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 14230098 - 14230063
Alignment:
Q  78 cgataatnatttgagaaaatgacataattcaatata 113  Q
    ||||||| ||||||||||||||||||||||||||||    
T  14230098 cgataatcatttgagaaaatgacataattcaatata 14230063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 30068081 - 30068045
Alignment:
Q  79 gataatnatttgagaaaatgacataattcaatataat 115  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  30068081 gataataatttgagaaaatgacataattcagtataat 30068045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 34201098 - 34201062
Alignment:
Q  80 ataatnatttgagaaaatgacataattcaatataatt 116  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  34201098 ataataatttgagaaaatgacataattcaatgtaatt 34201062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 116
Target Start/End: Complemental strand, 8798882 - 8798847
Alignment:
Q  81 taatnatttgagaaaatgacataattcaatataatt 116  Q
    |||| |||||||||||| ||||||||||||||||||    
T  8798882 taataatttgagaaaataacataattcaatataatt 8798847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 9936817 - 9936856
Alignment:
Q  76 atcgataatnatttgagaaaatgacataattcaatataat 115  Q
    ||||||||| |||| ||||||||| |||||||||||||||    
T  9936817 atcgataataatttaagaaaatgatataattcaatataat 9936856  T

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Target: chr8; HSP #6
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 29198530 - 29198496
Alignment:
Q  81 taatnatttgagaaaatgacataattcaatataat 115  Q
    |||| ||||||||||||||||||||||||| ||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaat 29198496  T

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Target: chr8; HSP #7
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 34739117 - 34739083
Alignment:
Q  76 atcgataatnatttgagaaaatgacataattcaat 110  Q
    ||||||||| || ||||||||||||||||||||||    
T  34739117 atcgataataatatgagaaaatgacataattcaat 34739083  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 40681987 - 40682025
Alignment:
Q  78 cgataatnatttgagaaaatgacataattcaatataatt 116  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  40681987 cgataataatttgagaaaatgacataattcaatgtaatt 40682025  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 18570977 - 18571014
Alignment:
Q  78 cgataatnatttgagaaaatgacataattcaatataat 115  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  18570977 cgataataatttgagaaaatgacataattcaatgtaat 18571014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 110
Target Start/End: Original strand, 30563415 - 30563446
Alignment:
Q  79 gataatnatttgagaaaatgacataattcaat 110  Q
    |||||| |||||||||||||||||||||||||    
T  30563415 gataataatttgagaaaatgacataattcaat 30563446  T

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Target: chr2; HSP #4
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 2073945 - 2073979
Alignment:
Q  76 atcgataatnatttgagaaaatgacataattcaat 110  Q
    ||||||||| |||||||||||| ||||||||||||    
T  2073945 atcgataataatttgagaaaataacataattcaat 2073979  T

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Target: chr2; HSP #5
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 108
Target Start/End: Complemental strand, 10535813 - 10535783
Alignment:
Q  78 cgataatnatttgagaaaatgacataattca 108  Q
    ||||||| |||||||||||||||||||||||    
T  10535813 cgataataatttgagaaaatgacataattca 10535783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 13204038 - 13204093
Alignment:
Q  86 atttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtcggaca 141  Q
    |||||||||||| |||||||| ||||||| |  |||| |||| |||||||||||||    
T  13204038 atttgagaaaattacataatttaatataactatatgtgtcagtgtcgtgtcggaca 13204093  T

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Target: chr2; HSP #7
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 44605191 - 44605149
Alignment:
Q  80 ataatnatttgagaaaatgacataattcaatataattccatgt 122  Q
    ||||| |||||||||||| |||||||||||| ||||| |||||    
T  44605191 ataataatttgagaaaataacataattcaatgtaattacatgt 44605149  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 2525898 - 2525861
Alignment:
Q  78 cgataatnatttgagaaaatgacataattcaatataat 115  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  2525898 cgataataatttgagcaaatgacataattcaatataat 2525861  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 35238238 - 35238201
Alignment:
Q  78 cgataatnatttgagaaaatgacataattcaatataat 115  Q
    |||||||  |||||||||||||||||||||||||||||    
T  35238238 cgataatattttgagaaaatgacataattcaatataat 35238201  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 38134460 - 38134423
Alignment:
Q  78 cgataatnatttgagaaaatgacataattcaatataat 115  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  38134460 cgataataatttgagaaaatgacataattcaatgtaat 38134423  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 44172943 - 44172907
Alignment:
Q  79 gataatnatttgagaaaatgacataattcaatataat 115  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  44172943 gataataatttgagaaaatgacataattcaatgtaat 44172907  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 18678162 - 18678190
Alignment:
Q  87 tttgagaaaatgacataattcaatataat 115  Q
    |||||||||||||||||||||||||||||    
T  18678162 tttgagaaaatgacataattcaatataat 18678190  T

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Target: chr7; HSP #6
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 12843225 - 12843171
Alignment:
Q  82 aatnatttgagaaaatgacataattcaatataattccatgtatcagagtcgtgtc 136  Q
    ||| |||||| ||||| |||||||||||| ||||| ||||| |||| ||||||||    
T  12843225 aataatttgataaaattacataattcaatgtaattacatgtgtcagtgtcgtgtc 12843171  T

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Target: chr7; HSP #7
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 41099793 - 41099759
Alignment:
Q  80 ataatnatttgagaaaatgacataattcaatataa 114  Q
    ||||| |||||||||||||| ||||||||||||||    
T  41099793 ataataatttgagaaaatgatataattcaatataa 41099759  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 40747826 - 40747789
Alignment:
Q  79 gataatnatttgagaaaatgacataattcaatataatt 116  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  40747826 gataataatttgagaaaatgacataattcaatgtaatt 40747789  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 11571591 - 11571627
Alignment:
Q  79 gataatnatttgagaaaatgacataattcaatataat 115  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  11571591 gataataatttgagaaaatgacataattcaatgtaat 11571627  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 116
Target Start/End: Original strand, 1262892 - 1262927
Alignment:
Q  81 taatnatttgagaaaatgacataattcaatataatt 116  Q
    |||| |||||||||||| ||||||||||||||||||    
T  1262892 taataatttgagaaaatcacataattcaatataatt 1262927  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 115
Target Start/End: Original strand, 3921674 - 3921709
Alignment:
Q  80 ataatnatttgagaaaatgacataattcaatataat 115  Q
    ||||| ||||||||||||||||||||||||| ||||    
T  3921674 ataataatttgagaaaatgacataattcaatgtaat 3921709  T

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Target: chr1; HSP #5
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 108
Target Start/End: Original strand, 42325565 - 42325595
Alignment:
Q  78 cgataatnatttgagaaaatgacataattca 108  Q
    ||||||| |||||||||||||||||||||||    
T  42325565 cgataataatttgagaaaatgacataattca 42325595  T

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Target: chr1; HSP #6
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 48785317 - 48785283
Alignment:
Q  79 gataatnatttgagaaaatgacataattcaatata 113  Q
    |||||| |||||||||||| |||||||||||||||    
T  48785317 gataataatttgagaaaataacataattcaatata 48785283  T

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Target: scaffold0037 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 102908 - 102948
Alignment:
Q  76 atcgataatnatttgagaaaatgacataattcaatataatt 116  Q
    ||||||||| |||||||||||||| |||||||||| |||||    
T  102908 atcgataataatttgagaaaatgatataattcaatgtaatt 102948  T

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Target: scaffold0571 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 110
Target Start/End: Original strand, 7696 - 7727
Alignment:
Q  79 gataatnatttgagaaaatgacataattcaat 110  Q
    |||||| |||||||||||||||||||||||||    
T  7696 gataataatttgagaaaatgacataattcaat 7727  T

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