View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4318-Insertion-20 (Length: 229)
Name: NF4318-Insertion-20
Description: NF4318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4318-Insertion-20 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 33921366 - 33921592
Alignment:
| Q |
3 |
aatgtctggtgtaacagctccgcccaaatatgcagtgtattctccctgctccaattttcagtcaagtatttgaccatgtccataatttgcaaacttgctt |
102 |
Q |
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| T |
33921366 |
aatgtctggtgtaacagctccacccaaatatgcagtgtattctccctgctccaattttcagtcaagtatttgaccatgtccataatttgcaaactagctt |
33921465 |
T |
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| Q |
103 |
taaagacattattcctcaattttcgctcctttaaaacagtcccaaatcagtctgaaaaattcagacgaaaacttaatcgtccgaaaacacagnnnnnnnn |
202 |
Q |
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| T |
33921466 |
caaagacattattcctcaattttcgctcctttaaaatagtcccaaatcagtctgaaaaattcagacgaaaacttaatcgtccgaaaacacagtttttttt |
33921565 |
T |
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| Q |
203 |
agtagcgtcattttagctttgttagct |
229 |
Q |
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| T |
33921566 |
agtagcgtcgttttagttttgttagct |
33921592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 14330414 - 14330369
Alignment:
| Q |
123 |
tttcgctcctttaaaacagtcccaaatcagtctgaaaaattcagac |
168 |
Q |
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| T |
14330414 |
tttcgctcctttaaaaccgtcccaaatccgtccgaaaaattcagac |
14330369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 9987117 - 9987072
Alignment:
| Q |
123 |
tttcgctcctttaaaacagtcccaaatcagtctgaaaaattcagac |
168 |
Q |
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| T |
9987117 |
tttcgctcctttaaaaccgtcctaaatccgtccgaaaaattcagac |
9987072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 13031583 - 13031652
Alignment:
| Q |
123 |
tttcgctcctttaaaacagtcccaaatcagtctgaaaaattcagacgaaaacttaatcgtccgaaaacac |
192 |
Q |
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| T |
13031583 |
tttcgctccgtttaaactgtcccaaatccgtccgaacaattcagacaaaaacgtatccgtccgaaaacac |
13031652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 17720874 - 17720919
Alignment:
| Q |
123 |
tttcgctcctttaaaacagtcccaaatcagtctgaaaaattcagac |
168 |
Q |
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| T |
17720874 |
tttcgctccgttaaaaccgtcccaaatccgtccgaaaaattcagac |
17720919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 19022103 - 19022148
Alignment:
| Q |
123 |
tttcgctcctttaaaacagtcccaaatcagtctgaaaaattcagac |
168 |
Q |
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| T |
19022103 |
tttcgctccgttaaaaccgtcccaaatccgtccgaaaaattcagac |
19022148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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