View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4318-Insertion-21 (Length: 206)
Name: NF4318-Insertion-21
Description: NF4318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4318-Insertion-21 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 206
Target Start/End: Original strand, 50111851 - 50112050
Alignment:
| Q |
6 |
caagtttgtcgaaataacagtgtgtcaccctgatttcggtacactttaaagctcggttttaattcatactaattaaaatagtaaaattgaatatgcaatg |
105 |
Q |
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| T |
50111851 |
caagtttgtcgaaatcacagtgtgtcaccctgatttcggtacactttaaagctcggttttaattcatactaattaaaatagtaaaattgaatatgcaatg |
50111950 |
T |
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| Q |
106 |
caatgcagcacagtgatatgatataaagaggctgtgaaaagtgaatcataccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgta |
205 |
Q |
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| T |
50111951 |
caatgcagcacagtgatatgatat-aagaggttgtgaaaagtgaatcataccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgta |
50112049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 50121564 - 50121631
Alignment:
| Q |
139 |
gtgaaaagtgaatcataccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgtac |
206 |
Q |
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| T |
50121564 |
gtgaaaagtgaatcataccaaaagcccaataaggcattggagctggtcttccaatgaaggatgtgtac |
50121631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 23931210 - 23931166
Alignment:
| Q |
149 |
aatcataccaaaagcccagtaaggcattggagctggtcttccaat |
193 |
Q |
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| T |
23931210 |
aatcataccaaaagcccagtaaggcatagcagctggtcttccaat |
23931166 |
T |
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