View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4318-Insertion-24 (Length: 178)
Name: NF4318-Insertion-24
Description: NF4318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4318-Insertion-24 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 42271700 - 42271526
Alignment:
| Q |
4 |
acaacaaattttctgaattacaaaagaaaagacaagttttgaagaatttaaatagggtttcattggataatggaagccaatataatgtgagattagcttt |
103 |
Q |
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| T |
42271700 |
acaacaaattttctgaattacaaaagaaaagacaagttttgaagaatttaaatagggtttcattggataatggaagccagtataatgtgagattagcttt |
42271601 |
T |
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| Q |
104 |
ggtccctattacattgatgaaaactacataatccttgatgaaagagacaatgcctacattgaggtcaatgacaaa |
178 |
Q |
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| T |
42271600 |
ggtccctattaccgtgatgaaaactacataatccttgatgaaagagacaatgcctacattgaggtcaatgacaaa |
42271526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 42284735 - 42284561
Alignment:
| Q |
4 |
acaacaaattttctgaattacaaaagaaaagacaagttttgaagaatttaaatagggtttcattggataatggaagccaatataatgtgagattagcttt |
103 |
Q |
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| T |
42284735 |
acaacaaattttctgaattacaaaagaaaagacaagttttgaagaatttaaatagggtttcattggataatggaagccaatataatgtgagattagcttt |
42284636 |
T |
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| Q |
104 |
ggtccctattacattgatgaaaactacataatccttgatgaaagagacaatgcctacattgaggtcaatgacaaa |
178 |
Q |
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| T |
42284635 |
ggtccctattaccgtgatgaaaactacataatccttgatgaaagagacaatgcctagattgaggtcaatgacaaa |
42284561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 35904225 - 35904075
Alignment:
| Q |
8 |
caaattttctgaattacaaaagaaaagacaagttttgaagaatttaaatagggtttcattggataatggaagccaatataatgtgagattagctttggtc |
107 |
Q |
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||||||||||||| |||||||||||||||||||| | |||||| |||| ||||| ||||||||||||||||||| ||||||| || |||||||||||| |
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| T |
35904225 |
caaattttctgaactacaaaagaaaagacaagttccggagaattcaaatcgggttccattggataatggaagccagtataatggtagcttagctttggtc |
35904126 |
T |
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| Q |
108 |
cctattacattgatgaaaactacataatccttgatgaaagagacaatgcct |
158 |
Q |
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||||| || ||||||||||||| |||||||||||||||||| ||||||| |
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| T |
35904125 |
cctatcaccgcgatgaaaactacagaatccttgatgaaagagaaaatgcct |
35904075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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