View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4318-Insertion-25 (Length: 190)
Name: NF4318-Insertion-25
Description: NF4318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4318-Insertion-25 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 7e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 7e-91
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 39267758 - 39267578
Alignment:
| Q |
10 |
ggtcagtggtggaaagaacaatagaaccaaactcagctaatgaagaagcttctccgaatggagaatcatagagaataggttcgggttgaggagaaagtgg |
109 |
Q |
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| T |
39267758 |
ggtcagtggtggaaagaacaatagaaccaaactcagccaatgaagaagcttctccgaatggagaatcatggagattaggttcgggttgaggagaaagtgg |
39267659 |
T |
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| Q |
110 |
accccacttgcgattttggttgagaggactgtttcgccatgaatggagaccagaccagggagaaatggttgaagaagagaa |
190 |
Q |
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| T |
39267658 |
accccacttgcgattttggttgagaggactgtttcgccatgaatggagaccagaccagggagaaatggttgaagaagagaa |
39267578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 39267216 - 39267185
Alignment:
| Q |
10 |
ggtcagtggtggaaagaacaatagaaccaaac |
41 |
Q |
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| T |
39267216 |
ggtcagtggtggaaagaacgatagaaccaaac |
39267185 |
T |
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