View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4318-Insertion-7 (Length: 105)
Name: NF4318-Insertion-7
Description: NF4318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4318-Insertion-7 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 101; Significance: 1e-50; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 1e-50
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 6948189 - 6948089
Alignment:
| Q |
5 |
gtatgtgagagacggtgtttatttgaatagtagtattagttggtgtgttcgtcaccgatattattgtcatttgaagaatcttatggttgaacaacttgtg |
104 |
Q |
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| T |
6948189 |
gtatgtgagagacggtgtttatttgaatagtagtattagttggtgtgttcgtcaccgatattattgtcatttgaagaatcttatggttgaacaacttgtg |
6948090 |
T |
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| Q |
105 |
a |
105 |
Q |
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| T |
6948089 |
a |
6948089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 6943250 - 6943170
Alignment:
| Q |
18 |
ggtgtttatttgaatagtagtattagttggtgtgttcgtcaccgatattattgtcatttgaagaatcttatggttgaacaa |
98 |
Q |
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| T |
6943250 |
ggtgtttatttgaaaagtagtattagttggtgtgttcgtcaccgatataattgtcatttgaagaatcttacagttgaacaa |
6943170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 6e-25
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 6935514 - 6935445
Alignment:
| Q |
18 |
ggtgtttatttgaatagtagtattagttggtgtgttcgtcaccgatattattgtcatttgaagaatctta |
87 |
Q |
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| T |
6935514 |
ggtgtttatttgaaaagtagtattagttggtgtgttcgttaccgatataattgtcatttgaagaatctta |
6935445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 6e-22
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 6921643 - 6921559
Alignment:
| Q |
21 |
gtttatttgaatagtagtattagttggtgtgttcgtcaccgatattattgtcatttgaagaatcttatggttgaacaacttgtga |
105 |
Q |
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| T |
6921643 |
gtttatttgaaaagtagtgttagttggtgtgttcgttgcagatattattgtcatttgaaaaatcttattgttgaacaatttgtga |
6921559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 6954812 - 6954728
Alignment:
| Q |
21 |
gtttatttgaatagtagtattagttggtgtgttcgtcaccgatattattgtcatttgaagaatcttatggttgaacaacttgtga |
105 |
Q |
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| T |
6954812 |
gtttatttgaataatagtattaattgggttgtccgtcaccgatattattgtcatttgaagaatcttacagttgaaaaatttgtga |
6954728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 1986264 - 1986166
Alignment:
| Q |
5 |
gtatgtgagagacggtgtttatttgaatagtagtattagttggtgtgttcgtcaccgatattattgtcatttgaagaatcttatggttgaacaacttgt |
103 |
Q |
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| T |
1986264 |
gtatgtgagaaatggtgtttatttgaatagtagtattagttggtgtgttcgtcaccgatataattgtcatttgaagaatcttacagttgaacaacttgt |
1986166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 15572203 - 15572119
Alignment:
| Q |
21 |
gtttatttgaatagtagtattagttggtgtgttcgtcaccgatattattgtcatttgaagaatcttatggttgaacaacttgtga |
105 |
Q |
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| T |
15572203 |
gtttatttgaacaatagtactaattggtttgcccgtcaacgatattattgtcatttgaagaatcttacgattgaacaatttgtga |
15572119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 13417213 - 13417153
Alignment:
| Q |
18 |
ggtgtttatttgaatagtagtattagttggtgtgttcgtcaccgatattattgtcatttga |
78 |
Q |
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| T |
13417213 |
ggtgtttatttcaataatagtattaattggtttgcccgtcaccgatataattgtcatttga |
13417153 |
T |
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