View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4318_low_2 (Length: 366)
Name: NF4318_low_2
Description: NF4318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4318_low_2 |
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| [»] chr1 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 65 - 366
Target Start/End: Original strand, 10989771 - 10990073
Alignment:
| Q |
65 |
gttgacttgaattacctgttaactaatt-aattacaaatatttacatttgaccaacacaaacaattctatcttatcagggcaattattaggaagttgtta |
163 |
Q |
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|||||||||||||||| ||||||||||| |||||||| ||||| ||||||||| | |||||||||||||||| | |||| ||||| ||||||| ||||| |
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| T |
10989771 |
gttgacttgaattacccgttaactaatttaattacaagtatttgcatttgacccaaacaaacaattctatctcacgagggaaattactaggaagctgtta |
10989870 |
T |
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| Q |
164 |
tagtgaaagtgagtttgaaaaattcctataaacagatcagtcaagacagagtactattactcaagaatcaataccatgaacactcattttgttatggctt |
263 |
Q |
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| T |
10989871 |
tagtgaaagtgagtttgaaaaattcctataataaacagagtcaagacatagtactattactcaagaatcaataccatgaacactcattatgttatggctt |
10989970 |
T |
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| Q |
264 |
tatttttgttgatggtttactttgttgttagaacaacaacagccacggtaattaactgtcaagaaaatttaacatgtggaaatcaag---ttatcaaatt |
360 |
Q |
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| T |
10989971 |
tatttttgttcatggtttactttgttgttagaacaactacagccatggtcaatgattctccag---atttaagatgtggaaatcaagttattatcaaatt |
10990067 |
T |
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| Q |
361 |
cccttt |
366 |
Q |
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|||||| |
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| T |
10990068 |
cccttt |
10990073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 120 - 366
Target Start/End: Original strand, 10906224 - 10906458
Alignment:
| Q |
120 |
acaaacaattctatcttatcagggcaattattaggaagttgttatagtgaaagtgagtttgaaaaattcctataaacagatcagtcaagacagagtacta |
219 |
Q |
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| T |
10906224 |
acaaacaattctatatcatgagggaaattactaggaagctgttatagtgaaagtgagtttgaaaaattcctataaacag---agttaagacatagtacta |
10906320 |
T |
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| Q |
220 |
ttactcaagaatcaataccatgaacactcattttgttatggctttatttttgttgatggtttactttgttgttagaacaacaacagccacggtaattaac |
319 |
Q |
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| T |
10906321 |
ttgctcaagaatcgataccatgaacac-----ttattatgg-tttattgttgtttatggtttattttgttgttagaacaactacagccatggtcaataat |
10906414 |
T |
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| Q |
320 |
tgtcaagaaaatttaacatgtggaaatcaagttatcaaattcccttt |
366 |
Q |
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| T |
10906415 |
tct---gcagatttaacatgtggaaatcaagttattaaattcccttt |
10906458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 120 - 366
Target Start/End: Original strand, 10976624 - 10976858
Alignment:
| Q |
120 |
acaaacaattctatcttatcagggcaattattaggaagttgttatagtgaaagtgagtttgaaaaattcctataaacagatcagtcaagacagagtacta |
219 |
Q |
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| T |
10976624 |
acaaacaattctatatcatgagggaaattactaggaaactgttatagtgaaagtgagtttgaaaaattcctataaacag---agtcaagacatagtacta |
10976720 |
T |
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| Q |
220 |
ttactcaagaatcaataccatgaacactcattttgttatggctttatttttgttgatggtttactttgttgttagaacaacaacagccacggtaattaac |
319 |
Q |
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| T |
10976721 |
ttgctcaagaatcaataacatgaacac-----ttattatgg-tttattgttgtttatggtttattttgttgttagaacaactacagccatggtcaatgat |
10976814 |
T |
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| Q |
320 |
tgtcaagaaaatttaacatgtggaaatcaagttatcaaattcccttt |
366 |
Q |
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| T |
10976815 |
tgtccag---atttaagatgtggaaatcaaaatatcaaatttccttt |
10976858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 269 - 366
Target Start/End: Complemental strand, 11001216 - 11001119
Alignment:
| Q |
269 |
ttgttgatggtttactttgttgttagaacaacaacagccacggtaattaactgtcaagaaaatttaacatgtggaaatcaagttatcaaattcccttt |
366 |
Q |
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| T |
11001216 |
ttgttgatggtttactttgttgttggaacaacaacagccacggtaattaattgtcaagaagatttaacatgtggaaatcaagttatcaaattcccttt |
11001119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 269 - 360
Target Start/End: Complemental strand, 10995573 - 10995482
Alignment:
| Q |
269 |
ttgttgatggtttactttgttgttagaacaacaacagccacggtaattaactgtcaagaaaatttaacatgtggaaatcaagttatcaaatt |
360 |
Q |
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| T |
10995573 |
ttgttgatggtttactttgttgttggaacaacaatagccacggtaattaactgtcaagaagatttaacatgtggaaatcaagttatcaaatt |
10995482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 241 - 366
Target Start/End: Original strand, 10928833 - 10928964
Alignment:
| Q |
241 |
gaacactcattttgttatggctttatttttgttgatggtttactttgttgttagaacaacaacagccacg------gtaattaactgtcaagaaaattta |
334 |
Q |
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||||||| ||| ||||||||| || || ||||| ||| ||||| |||||||| ||||||||||||||||| | || |||||||| |||| ||||| |
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| T |
10928833 |
gaacactaattatgttatggcattcttgttgttcatgttttacattgttgttggaacaacaacagccacgcccacagaaaataactgtccagaagattta |
10928932 |
T |
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| Q |
335 |
acatgtggaaatcaagttatcaaattcccttt |
366 |
Q |
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| T |
10928933 |
acatgtggaaatcaagttatcaaatttccttt |
10928964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 11039552 - 11039588
Alignment:
| Q |
330 |
atttaacatgtggaaatcaagttatcaaattcccttt |
366 |
Q |
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| T |
11039552 |
atttaacatgtggaaatcaagttatcaaattcccttt |
11039588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 11024483 - 11024529
Alignment:
| Q |
320 |
tgtcaagaaaatttaacatgtggaaatcaagttatcaaattcccttt |
366 |
Q |
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| T |
11024483 |
tgtccagaagatttaacatgtggaaatcaagttatcaagttcccttt |
11024529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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