View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4318_low_3 (Length: 310)
Name: NF4318_low_3
Description: NF4318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4318_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 291
Target Start/End: Original strand, 50111317 - 50111601
Alignment:
| Q |
7 |
tagattattcttaagttatgtgtaggtacaaacaaaatattttgcatttgttccgatgcatggtctcttttgatgtataagaccatggattcattcaaac |
106 |
Q |
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| T |
50111317 |
tagattattcttaagttatgtgtaggtacaaacaaaatattttgcatttgttccgatgcatggtctcttttgatgtataagaccatggattcattcaaac |
50111416 |
T |
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| Q |
107 |
ataaagatttttctcttctttctccttcatgaaacaatggattagatatttttatacagatacaattacaaatgtattatctaggtaggcatatttggtt |
206 |
Q |
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| T |
50111417 |
ataaagatttttctctcctttatccttcatgaaacaatggattagatatttttatacagatacaattacaaatgtatcatctacgtaggcatatttggtt |
50111516 |
T |
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| Q |
207 |
actgacaaagacccacaaattgctctgcacataacagacacatgccatataggtcaagtcccgtgacttaaaatattaaaacaaa |
291 |
Q |
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| T |
50111517 |
actgacaatgacccacaaattgctctgcacataacagacacatgccatataggtcaagtcccgtgacttaaaatattaaaacaaa |
50111601 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 37392029 - 37392061
Alignment:
| Q |
278 |
aatattaaaacaaagagaaatgatatttgtaca |
310 |
Q |
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| T |
37392029 |
aatatttaaacaaagagaaatgatatttgtaca |
37392061 |
T |
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