View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4318_low_6 (Length: 273)
Name: NF4318_low_6
Description: NF4318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4318_low_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 50111077 - 50111339
Alignment:
| Q |
10 |
catcatcattccatataacatcaagtggaattttggctttattgtaattttcaacaacatcttctacaacagataggttgtgataaccccatctgcattg |
109 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50111077 |
catcatcattccatataacatcgagtggaattttggctttattgtaattttcaacaacatcttctacaacagataggttgtgataaccccatctgcattg |
50111176 |
T |
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| Q |
110 |
gtggaatcctattacatagcaaataaaataagtgagccatgttggtcaaacacttcttttgacagaataattttttgatggatttaaaatagtttaggga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50111177 |
gtggaatcctattacatagcaaataaaataagtgag-catgttggtcaaacacttcttttgacagaataattttttgatggatttaaaatagtttaggga |
50111275 |
T |
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| Q |
210 |
cttaatttggagagatggtaatagtttaaggactaaagtgatagattattcttaagttatgtgt |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50111276 |
cttaatttggagagatggtaatagtttaaggactaaagtgatagattattcttaagttatgtgt |
50111339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 50121100 - 50121211
Alignment:
| Q |
10 |
catcatcattccatataacatcaagtggaattttggctttattgtaattttcaacaacatcttctacaacagataggttgtgataaccccatctgcattg |
109 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
50121100 |
catcatcattccatatcacatcaagtggaattttagctttcttgtaattctcaacaacatcttcaataacagataggttgtgataaccccatctgcattg |
50121199 |
T |
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| Q |
110 |
gtggaatcctat |
121 |
Q |
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| T |
50121200 |
gtggaatcctat |
50121211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 23933717 - 23933616
Alignment:
| Q |
18 |
ttccatataacatcaagtggaattttggctttattgtaattttcaacaacatcttctacaacagataggttgtgataaccccatctgcattggtggaatc |
117 |
Q |
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||||| || ||||||||||| |||| || || |||||| | || ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||| |
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| T |
23933717 |
ttccagatcacatcaagtgggatttgagccttcttgtaactatccacaacatcttcaacaactgatagattgtgatatccccatctgcattggtggaatc |
23933618 |
T |
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| Q |
118 |
ct |
119 |
Q |
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|| |
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| T |
23933617 |
ct |
23933616 |
T |
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