View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4318_low_9 (Length: 235)
Name: NF4318_low_9
Description: NF4318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4318_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 18133350 - 18133569
Alignment:
| Q |
1 |
ctctggcaccaaagatcttcaaatggttaacctaactctccgtgttctttctcgtcctgatactgagaatttacctaccattgttcagaatctcggtctc |
100 |
Q |
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| T |
18133350 |
ctctggcaccaaagatcttcaaatggttaacctaactctccgtgttctttctcgtcctgatactgagaatttacctaccattgttcagaatctcggtctc |
18133449 |
T |
|
| Q |
101 |
gaatacgacgaaaaagttcttccttcaatcggtaatgttataattctttacagaacttgaaaattatataaaatgtatgttgattattgatagaagtatt |
200 |
Q |
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| T |
18133450 |
gaatacgacgaaaaagttcttccttcaatcggtaatgttataattctttacagaacttgaaaattatataaaatgtatattgattattgatagaagtatt |
18133549 |
T |
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| Q |
201 |
tagggcctgtttggataaac |
220 |
Q |
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|||||||||||||||||||| |
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| T |
18133550 |
tagggcctgtttggataaac |
18133569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 1385126 - 1384998
Alignment:
| Q |
8 |
accaaagatcttcaaatggttaacctaactctccgtgttctttctcgtcctgatactgagaatttacctaccattgttcagaatctcggtctcgaatacg |
107 |
Q |
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|||||||||||||| ||||| || || ||||| |||||||| ||||||||||||||||| | | ||||| |||||||||||||||||||| ||||| | |
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| T |
1385126 |
accaaagatcttcagatggtgaatctcactcttcgtgttctctctcgtcctgatactgaacgtcttcctactattgttcagaatctcggtcttgaatatg |
1385027 |
T |
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| Q |
108 |
acgaaaaagttcttccttcaatcggtaat |
136 |
Q |
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| T |
1385026 |
acgagaaggttcttccttccatcggtaat |
1384998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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