View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4319-Insertion-1 (Length: 229)
Name: NF4319-Insertion-1
Description: NF4319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4319-Insertion-1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43173417 - 43173645
Alignment:
| Q |
1 |
ccatggaccaaagagcacctccattcaactttttaatggcaccaccctccactgtcatgagaacaacagcaattccagcaaatgccagtgacaacatgga |
100 |
Q |
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| T |
43173417 |
ccatggaccaaagagcacctccattcaactttttaatggcaccaccctccactgtcatgagaacaacagcaattccagcaaatgccagtgacaacatgga |
43173516 |
T |
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| Q |
101 |
attttccttccttcccaagtataatgcctccacatattatgtgtacatgtactttgctgaaatccagaagctccaagcaaatcaaattagagagttcaac |
200 |
Q |
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| T |
43173517 |
atattccttccttcccaagtataatgcctccacatattatgtgtacatgtactttgctgaaatccagaagatccaggcaaatcaaattagagagttcaac |
43173616 |
T |
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| Q |
201 |
atttttgtaaatggggagcttttaaatag |
229 |
Q |
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| T |
43173617 |
atttttgtaaatggggagcttttaaatag |
43173645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 43163781 - 43163961
Alignment:
| Q |
41 |
accaccctccactgtcatgagaacaacagcaattccagcaaatgccagtgacaacatggaattttccttccttcccaagtataatgcctccacatattat |
140 |
Q |
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| T |
43163781 |
accaccctccaatgtgatgcgaacaacagcaattccagcaaatgccagtgacaacatggaattttccttccttcccaagtataattcctccagatattat |
43163880 |
T |
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| Q |
141 |
gtgtacatgtactttgctgaaatccagaagctccaagcaaatcaaattagagagttcaacatttttgtaaatggggagctt |
221 |
Q |
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| T |
43163881 |
gtgtacatgtactttgctgaaatccagaagctccaggaaaatcaaatcagagagttcaatatttttgtaaatgggaagctt |
43163961 |
T |
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