View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4319-Insertion-11 (Length: 83)
Name: NF4319-Insertion-11
Description: NF4319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4319-Insertion-11 |
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Alignment Details
Target: chr2 (Bit Score: 52; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 42208707 - 42208632
Alignment:
| Q |
1 |
actagacctattaattagaattgaaaagtaaacgta-ttttctcaagca-tttttgtcacaag-aaatttaaaacg |
73 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| |
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| T |
42208707 |
actagacctattaattagaattgaaaagtaaacgtatttttctcaagcattttttgtcacaagaaaatttaaaacg |
42208632 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 42215731 - 42215686
Alignment:
| Q |
7 |
cctattaattagaattgaaaagtaaacgtattttctcaagcatttt |
52 |
Q |
| |
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||||||| |||||||||||||||||||| ||||| ||||| ||||| |
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| T |
42215731 |
cctattatttagaattgaaaagtaaacgcattttttcaagtatttt |
42215686 |
T |
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