View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4319_high_1 (Length: 393)

Name: NF4319_high_1
Description: NF4319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4319_high_1
NF4319_high_1
[»] chr5 (13 HSPs)
chr5 (254-378)||(29568361-29568485)
chr5 (254-378)||(29168239-29168363)
chr5 (255-378)||(1758133-1758256)
chr5 (255-378)||(29425281-29425404)
chr5 (255-362)||(29569708-29569815)
chr5 (254-362)||(27918634-27918742)
chr5 (107-177)||(29568559-29568629)
chr5 (109-177)||(1757999-1758067)
chr5 (107-177)||(29569867-29569937)
chr5 (107-153)||(29166883-29166929)
chr5 (109-150)||(29425195-29425236)
chr5 (107-139)||(27918541-27918573)
chr5 (19-49)||(29568681-29568711)
[»] chr4 (8 HSPs)
chr4 (255-383)||(27521322-27521450)
chr4 (255-378)||(18986085-18986208)
chr4 (260-378)||(27461990-27462108)
chr4 (260-378)||(27482129-27482247)
chr4 (109-177)||(27461851-27461919)
chr4 (109-177)||(27481990-27482058)
chr4 (109-177)||(27521516-27521584)
chr4 (109-177)||(18985951-18986019)
[»] chr3 (2 HSPs)
chr3 (254-362)||(25518468-25518576)
chr3 (120-177)||(25518343-25518400)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 254 - 378
Target Start/End: Complemental strand, 29568485 - 29568361
Alignment:
Q  254 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568485 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 29568386  T
Q  354 aatgctcttagccactgtgtctctg 378  Q
    ||||||||||||| |||||||||||    
T  29568385 aatgctcttagccgctgtgtctctg 29568361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 254 - 378
Target Start/End: Original strand, 29168239 - 29168363
Alignment:
Q  254 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 353  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29168239 ttctgctcaccaactatcatccaataagcattctttcaacgcaagcaatctcacccgtaatggcttctccaccattacacttcctttcagtctccgtggg 29168338  T
Q  354 aatgctcttagccactgtgtctctg 378  Q
    ||||||||||||  |||||||||||    
T  29168339 aatgctcttagctgctgtgtctctg 29168363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 255 - 378
Target Start/End: Original strand, 1758133 - 1758256
Alignment:
Q  255 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 354  Q
    ||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1758133 tctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgcggga 1758232  T
Q  355 atgctcttagccactgtgtctctg 378  Q
    |||||||||||| |||||||||||    
T  1758233 atgctcttagccgctgtgtctctg 1758256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 255 - 378
Target Start/End: Original strand, 29425281 - 29425404
Alignment:
Q  255 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 354  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  29425281 tctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtggga 29425380  T
Q  355 atgctcttagccactgtgtctctg 378  Q
    |||||||||||| |||||||||||    
T  29425381 atgctcttagccgctgtgtctctg 29425404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 255 - 362
Target Start/End: Complemental strand, 29569815 - 29569708
Alignment:
Q  255 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 354  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29569815 tctgctcaccaactatcatccaagaagcattcttccgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggca 29569716  T
Q  355 atgctctt 362  Q
    ||||||||    
T  29569715 atgctctt 29569708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 254 - 362
Target Start/End: Original strand, 27918634 - 27918742
Alignment:
Q  254 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 353  Q
    |||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27918634 ttctgctcaccaactatcatccaagaagcattcttctggcgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggc 27918733  T
Q  354 aatgctctt 362  Q
    || ||||||    
T  27918734 aacgctctt 27918742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 29568629 - 29568559
Alignment:
Q  107 gagtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568629 gagtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 29568559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 1757999 - 1758067
Alignment:
Q  109 gtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 177  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1757999 gtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 1758067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 29569937 - 29569867
Alignment:
Q  107 gagtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 177  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  29569937 gagtggtctacagattcaacaagaatccattttgatccctcacaaacacaaacaatccatgattattccaa 29569867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 29166883 - 29166929
Alignment:
Q  107 gagtgatctacagattcaacaagaatccatgttgatccctcacaaac 153  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  29166883 gagtgatctacagattcaacaagaatccatgatgatccctcacaaac 29166929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 29425195 - 29425236
Alignment:
Q  109 gtgatctacagattcaacaagaatccatgttgatccctcaca 150  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  29425195 gtgatttacagattcaacaagaatccatgttgatccctcaca 29425236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 27918541 - 27918573
Alignment:
Q  107 gagtgatctacagattcaacaagaatccatgtt 139  Q
    |||||||||||||||||||||||||||||||||    
T  27918541 gagtgatctacagattcaacaagaatccatgtt 27918573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 29568711 - 29568681
Alignment:
Q  19 ataactttgccactcacacttactttacaac 49  Q
    |||||||||||||||||||||||||||||||    
T  29568711 ataactttgccactcacacttactttacaac 29568681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 255 - 383
Target Start/End: Complemental strand, 27521450 - 27521322
Alignment:
Q  255 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 354  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  27521450 tctgcccaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcggga 27521351  T
Q  355 atgctcttagccactgtgtctctgctcct 383  Q
    |||||||||||| ||||||||||| ||||    
T  27521350 atgctcttagccgctgtgtctctgatcct 27521322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 255 - 378
Target Start/End: Original strand, 18986085 - 18986208
Alignment:
Q  255 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 354  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18986085 tctgctcaccaaccgtcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacactttctttcagtctccgtggga 18986184  T
Q  355 atgctcttagccactgtgtctctg 378  Q
    || ||||||||| |||||||||||    
T  18986185 atactcttagccgctgtgtctctg 18986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 260 - 378
Target Start/End: Original strand, 27461990 - 27462108
Alignment:
Q  260 tcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgct 359  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  27461990 tcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgtggaaatgct 27462089  T
Q  360 cttagccactgtgtctctg 378  Q
    ||||||| |||||||||||    
T  27462090 cttagccgctgtgtctctg 27462108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 260 - 378
Target Start/End: Original strand, 27482129 - 27482247
Alignment:
Q  260 tcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgct 359  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||    
T  27482129 tcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacaattcctttcagtctccgcgggaatgct 27482228  T
Q  360 cttagccactgtgtctctg 378  Q
    ||||||| |||||||||||    
T  27482229 cttagccgctgtgtctctg 27482247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 27461851 - 27461919
Alignment:
Q  109 gtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 177  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27461851 gtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 27461919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 27481990 - 27482058
Alignment:
Q  109 gtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 177  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27481990 gtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 27482058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 27521584 - 27521516
Alignment:
Q  109 gtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 177  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27521584 gtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 27521516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 18985951 - 18986019
Alignment:
Q  109 gtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 177  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18985951 gtgatttacaaattcaacaagaatccatggtgatccctcacaaacagaaacaatccatgattattccaa 18986019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 254 - 362
Target Start/End: Original strand, 25518468 - 25518576
Alignment:
Q  254 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 353  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  25518468 ttctcctcaccaaccatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtcttcgtggt 25518567  T
Q  354 aatgctctt 362  Q
    |||||||||    
T  25518568 aatgctctt 25518576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 25518343 - 25518400
Alignment:
Q  120 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25518343 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 25518400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University