View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4319_low_5 (Length: 302)

Name: NF4319_low_5
Description: NF4319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4319_low_5
NF4319_low_5
[»] chr1 (1 HSPs)
chr1 (13-287)||(6615706-6615979)
[»] chr7 (3 HSPs)
chr7 (60-162)||(10623454-10623556)
chr7 (66-159)||(28002754-28002848)
chr7 (60-174)||(16994575-16994690)
[»] chr6 (1 HSPs)
chr6 (60-183)||(3008687-3008809)
[»] chr4 (2 HSPs)
chr4 (60-162)||(18402727-18402828)
chr4 (60-106)||(29459965-29460012)
[»] chr2 (3 HSPs)
chr2 (70-162)||(3388223-3388315)
chr2 (60-183)||(4724430-4724554)
chr2 (60-106)||(39229063-39229109)
[»] chr5 (1 HSPs)
chr5 (60-159)||(43168591-43168689)
[»] chr3 (1 HSPs)
chr3 (58-105)||(51537532-51537579)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 6615979 - 6615706
Alignment:
Q  13 gaacctgtgaggtttaatttcggcgaattaatcgattgccaacacggcaacaactccatgaacaaagcagcaagcatcaagctctttcgagcatacagta 112  Q
    |||| ||| |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  6615979 gaacatgtaaggtttaatttcggcgaattgattgattgccaacacggcaacaactccataaacaaagcaacaagcatcaagctctttcgagcatacagta 6615880  T
Q  113 ccaatgtgtaaacaaacatgacaacttgaaacctatagatctcaacaaatatgaaaatatcatcgagtcgatattataagataattgataatattaacaa 212  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||    
T  6615879 ccaatgtgtaaacagacatgacaacttgaaacctatagatctcaacaaatatggatatatcatcgagtcgatattataagataattgataatactaacaa 6615780  T
Q  213 gagtataattaaaaacattaataaatacnnnnnnnnaaatagtattttaattaaagcccgaggaagttccaattt 287  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||| |||||||    
T  6615779 gagtataattaaaaacattaataaata-ttttttttaaatagtattttaattaaagcccgaggaagtaccaattt 6615706  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 10623556 - 10623454
Alignment:
Q  60 caacaactccatgaacaaagcagcaagcatcaagctctttcgagcatacagtaccaatgtgtaaacaaacatgacaacttgaaacctatagatctcaaca 159  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||  | |||||||||| |  || ||| |||||||||||||||  |||||||||||    
T  10623556 caacaactccctgaacaaagcagcaagcatgaagctctttcgagcatgaaataccaatgtgcaggcagacaagacaacttgaaacctgcagatctcaaca 10623457  T
Q  160 aat 162  Q
    |||    
T  10623456 aat 10623454  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 28002848 - 28002754
Alignment:
Q  66 ctccatgaacaaagcagcaagcatcaa-gctctttcgagcatacagtaccaatgtgtaaacaaacatgacaacttgaaacctatagatctcaaca 159  Q
    |||| ||||||||||||||||||| || ||||||||||||||| |  ||||| |||||  || ||| |||||||||||||||  |||||||||||    
T  28002848 ctccctgaacaaagcagcaagcataaaagctctttcgagcataaaaaaccaaagtgtatgcagacacgacaacttgaaacctgcagatctcaaca 28002754  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 16994690 - 16994575
Alignment:
Q  60 caacaactccatgaacaaagcagcaagcat-caagctctttcgagcatacagtaccaatgtgtaaacaaacatgacaacttgaaacctatagatctcaac 158  Q
    |||||||||||||||||||||| |||||||  ||||||||| ||||||  | |||||  |||||  || ||| ||| |||||||| ||  ||||||||||    
T  16994690 caacaactccatgaacaaagcaacaagcataaaagctcttttgagcatcaaataccagagtgtaggcagacaagacgacttgaaatctgcagatctcaac 16994591  T
Q  159 aaatatgaaaatatca 174  Q
    |||  |||||| ||||    
T  16994590 aaacctgaaaacatca 16994575  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 3008687 - 3008809
Alignment:
Q  60 caacaactccatgaacaaagcagcaagcatcaagctctttcgagcatacagtaccaatgtgtaaacaaacatgacaacttgaaacctatagatctcaaca 159  Q
    |||||||||| ||||||| ||||||||||| |||||||||| |||||  |||||||||||| |  || |||  || |||||||||||| |||||||||||    
T  3008687 caacaactccctgaacaa-gcagcaagcataaagctctttcaagcatgaagtaccaatgtgaaggcagacaatacgacttgaaacctacagatctcaaca 3008785  T
Q  160 aatatgaaaatatcatcgagtcga 183  Q
    ||| || ||| ||||| |||||||    
T  3008786 aatctggaaacatcatagagtcga 3008809  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 18402727 - 18402828
Alignment:
Q  60 caacaactccatgaacaaagcagcaagcatcaagctctttcgagcatacagtaccaatgtgtaaacaaacatgacaacttgaaacctatagatctcaaca 159  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| ||| |||| |||||||| | || ||| ||| |||||||| ||  |||||||||||    
T  18402727 caacaactccctgaacaaagcagcaagcataaagctctttcgagtataaagtatcaatgtgt-agcagacaagacgacttgaaatctgcagatctcaaca 18402825  T
Q  160 aat 162  Q
    |||    
T  18402826 aat 18402828  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 29459965 - 29460012
Alignment:
Q  60 caacaactccatgaacaaagcagcaagcatca-agctctttcgagcat 106  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||||    
T  29459965 caacaactccctgaacaaagcagcaagcataagagctctttcgagcat 29460012  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 3388315 - 3388223
Alignment:
Q  70 atgaacaaagcagcaagcatcaagctctttcgagcatacagtaccaatgtgtaaacaaacatgacaacttgaaacctatagatctcaacaaat 162  Q
    ||||| |||||||||||||| || || |||| |||||  |||||||  ||| || |||| | |||||||||||||||| ||||||||||||||    
T  3388315 atgaataaagcagcaagcataaaactatttcaagcatgaagtaccagcgtgcaagcaaataagacaacttgaaacctacagatctcaacaaat 3388223  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 183
Target Start/End: Complemental strand, 4724554 - 4724430
Alignment:
Q  60 caacaactccatgaacaaagcagcaagcat-caagctctttcgagcatacagtaccaatgtgtaaacaaacatgacaacttgaaacctatagatctcaac 158  Q
    |||||| ||||||| |||||||||||||||  ||||||||||||||||  |||| ||  |||||   ||||| ||||||||||||| |   |||||||||    
T  4724554 caacaattccatgatcaaagcagcaagcataaaagctctttcgagcattaagtatcatagtgtaggtaaacaagacaacttgaaacttgccgatctcaac 4724455  T
Q  159 aaatatgaaaatatcatcgagtcga 183  Q
    |||| | |||| ||||  |||||||    
T  4724454 aaatctaaaaacatcagagagtcga 4724430  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 39229109 - 39229063
Alignment:
Q  60 caacaactccatgaacaaagcagcaagcatcaagctctttcgagcat 106  Q
    |||||||||  ||||||||||||||||||| || |||||||||||||    
T  39229109 caacaactctctgaacaaagcagcaagcataaaactctttcgagcat 39229063  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 43168591 - 43168689
Alignment:
Q  60 caacaactccatgaacaaagcagcaagcatcaagctctttcgagcatacagtaccaatgtgtaaacaaacatgacaacttgaaacctatagatctcaaca 159  Q
    |||||||||| ||||||| | ||||||||| ||||||||||||||| | |||| |   |||||| ||||||  || |||||||||||  |||||||||||    
T  43168591 caacaactccctgaacaa-gaagcaagcataaagctctttcgagcacaaagtatctgcgtgtaagcaaacaaaacgacttgaaacctgcagatctcaaca 43168689  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 51537532 - 51537579
Alignment:
Q  58 ggcaacaactccatgaacaaagcagcaagcatcaagctctttcgagca 105  Q
    ||||| |||||| ||||||||||||||||||  |||||||||||||||    
T  51537532 ggcaaaaactccctgaacaaagcagcaagcaaaaagctctttcgagca 51537579  T

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