View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4320-Insertion-10 (Length: 125)
Name: NF4320-Insertion-10
Description: NF4320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4320-Insertion-10 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 7e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 44949942 - 44950065
Alignment:
| Q |
1 |
attataaattaaaacgttaagtcaatcataatagagaacctttgaacccaatttggctaaaattttgaacatggaaaaaatgaaataggcactatgacaa |
100 |
Q |
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| T |
44949942 |
attataaattaaaacgttaagtcaatcataatagagaacctttgaacactatccatctaaaattttgaacatggaaaaaatgaaataggcactatgacaa |
44950041 |
T |
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| Q |
101 |
gtcattatgacaatgtagacaaaa |
124 |
Q |
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| T |
44950042 |
gtcattatgacaatgtagacaaaa |
44950065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 6470785 - 6470894
Alignment:
| Q |
2 |
ttataaattaaaacgttaagtcaatca-taatagagaacctttgaacccaatttggctaaaattttg-aacatggaaaaaatgaaataggcactatgaca |
99 |
Q |
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| T |
6470785 |
ttataaattaaaatggtgagtgaatcaataataaagaatctttcaaccctatccgtctcaaattttggaacatggaaaaaacaaaataggcactatgaca |
6470884 |
T |
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| Q |
100 |
agtcattatg |
109 |
Q |
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| T |
6470885 |
agtcaatatg |
6470894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 44944080 - 44944148
Alignment:
| Q |
57 |
ctaaaattttgaacatggaaaaaatgaaataggcactatgacaagtcattatg-acaatgtagacaaaa |
124 |
Q |
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| T |
44944080 |
ctaaaattttgatcactgaaaaaacaaaataggcacgatgacaagtcaatatgcacaatgtagacaaaa |
44944148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 418914 - 418833
Alignment:
| Q |
24 |
aatcataatagagaacctttgaacccaatttggctaaaattttg-aacatggaaaaaatgaaataggcactatgacaagtca |
104 |
Q |
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| T |
418914 |
aatcataataaagaatctttaaaccctactcatctaaaattttggaacatggaaaaaatgaaataggcaccatgacaagtca |
418833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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