View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4320-Insertion-14 (Length: 38)
Name: NF4320-Insertion-14
Description: NF4320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4320-Insertion-14 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 38; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 42635288 - 42635325
Alignment:
| Q |
1 |
gttacatggcttatacagagtcggcaaaggccaaagtt |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42635288 |
gttacatggcttatacagagtcggcaaaggccaaagtt |
42635325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44096907 - 44096871
Alignment:
| Q |
1 |
gttacatggcttatacagagtcggcaaaggccaaagt |
37 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
44096907 |
gttacatggcttatacagagtcagcaaaagccaaagt |
44096871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University