View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4320-Insertion-21 (Length: 174)
Name: NF4320-Insertion-21
Description: NF4320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4320-Insertion-21 |
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| [»] chr3 (7 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 2e-84; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 2e-84
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 37635139 - 37635311
Alignment:
| Q |
1 |
atgtgaaaagacaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgggaattgaccgttaa |
100 |
Q |
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| T |
37635139 |
atgtgaaaag-caatggttcatcaaggttgttgaatacattaacaacaacattgttattgctagtgctgttgatttcaggtcctgggaattgaccgttaa |
37635237 |
T |
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| Q |
101 |
taaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaa |
174 |
Q |
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| T |
37635238 |
taaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaa |
37635311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 2e-84
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 37638053 - 37638225
Alignment:
| Q |
1 |
atgtgaaaagacaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgggaattgaccgttaa |
100 |
Q |
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| T |
37638053 |
atgtgaaaag-caatggttcatcaaggttgttgaatacattaacaacaacattgttattgctagtgctgttgatttcaggtcctgggaattgaccgttaa |
37638151 |
T |
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| Q |
101 |
taaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaa |
174 |
Q |
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| T |
37638152 |
taaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaa |
37638225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 2e-84
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 37646341 - 37646513
Alignment:
| Q |
1 |
atgtgaaaagacaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgggaattgaccgttaa |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37646341 |
atgtgaaaag-caatggttcatcaaggttgttgaatacattaacaacaacattgttattgctagtgctgttgatttcaggtcctgggaattgaccgttaa |
37646439 |
T |
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| Q |
101 |
taaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaa |
174 |
Q |
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| T |
37646440 |
taaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaa |
37646513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 158; E-Value: 2e-84
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 37649254 - 37649426
Alignment:
| Q |
1 |
atgtgaaaagacaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgggaattgaccgttaa |
100 |
Q |
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| T |
37649254 |
atgtgaaaag-caatggttcatcaaggttgttgaatacattaacaacaacattgttattgctagtgctgttgatttcaggtcctgggaattgaccgttaa |
37649352 |
T |
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| Q |
101 |
taaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaa |
174 |
Q |
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| T |
37649353 |
taaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaa |
37649426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 158; E-Value: 2e-84
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 37652166 - 37652338
Alignment:
| Q |
1 |
atgtgaaaagacaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgggaattgaccgttaa |
100 |
Q |
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| T |
37652166 |
atgtgaaaag-caatggttcatcaaggttgttgaatacattaacaacgacattgttgttgctagtgctgttgatttcaggtcctgggaattgaccgttaa |
37652264 |
T |
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| Q |
101 |
taaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaa |
174 |
Q |
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| T |
37652265 |
taaggataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaa |
37652338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 85; E-Value: 9e-41
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 37640967 - 37641074
Alignment:
| Q |
1 |
atgtgaaaagacaatggttcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgggaattgaccgttaa |
100 |
Q |
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| T |
37640967 |
atgtgaaaag-caatggttcatcaaggttgttgaatacattagcaacaacattgttattgctagtgctgttgatttcaggtcctgggaattgaccattaa |
37641065 |
T |
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| Q |
101 |
taaggatac |
109 |
Q |
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| T |
37641066 |
taaggatac |
37641074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 70; E-Value: 8e-32
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 37643531 - 37643600
Alignment:
| Q |
105 |
gataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaa |
174 |
Q |
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| T |
37643531 |
gataccctgctggggtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaa |
37643600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 32388493 - 32388641
Alignment:
| Q |
19 |
tcatcaaggttgttgaatacattaacaacaacattgttgttgctggtgctgttgatttcaggtcctgggaattgaccgttaataaggataccctgctggg |
118 |
Q |
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||||||||||||||||| || ||||| |||| |||||||||||||| | ||| ||||||||||| |||||||||||||| || || ||||||| || | |
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| T |
32388493 |
tcatcaaggttgttgaaaacgttaactacaatgttgttgttgctggtaccgttaatttcaggtcccgggaattgaccgttgatgagaatacccttttgag |
32388592 |
T |
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| Q |
119 |
gtgttccaagtggtgaaatggtaccataggtaaccttccatgtatagta |
167 |
Q |
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| T |
32388593 |
gagtacccaaaggtgcaatgttaccataggtaaccttccatgtatagta |
32388641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 5884239 - 5884283
Alignment:
| Q |
130 |
ggtgaaatggtaccataggtaaccttccatgtatagtaaatgtaa |
174 |
Q |
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| T |
5884239 |
ggtgaaatggtaccataggtaacattccatgtgaagtaaatgtaa |
5884283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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