View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4320-Insertion-8 (Length: 257)
Name: NF4320-Insertion-8
Description: NF4320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4320-Insertion-8 |
 | |
|
| [»] scaffold0440 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0440 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 12897 - 12639
Alignment:
| Q |
1 |
agggtggtcattacaacagaattgtggagataactgaaaatgcaggaaaatgtcttctcaatgagtacatggtaagaaaagtcttcatgtgcagtcttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12897 |
agggtggtcattacaacagaattgtggagataactgaaaatgcaggaaaatgtcttctcaatgagtacatggtaagaaaagtcttcatgtgcagtcttca |
12798 |
T |
|
| Q |
101 |
attcttaagccgttacaatatttgttgttttctggactctaattttgaatgttgtttgaataagctaaattgaatatctcattttcgaaatactttgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12797 |
attcttaagccgttacaatatttgttgttttctggactctaattttgaatgttgtttgaataagctaaattgaatatcgcattttcgaaatactttgtta |
12698 |
T |
|
| Q |
201 |
tacacgacaaatgagcaaattaaggg-aaaatatgcagg-aataatcatgaaaggaact |
257 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
12697 |
tacacgacaaatgagcaaattaagggaaaaatatgcaggaaataatcatgaaaggaact |
12639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 40977326 - 40977164
Alignment:
| Q |
1 |
agggtggtcattacaacagaattgtggagataactgaaaatgcaggaaaatgtcttctcaatgagtacatggtaag-aaaagtcttcatgtgcagtcttc |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
40977326 |
agggtggacattacaacagaattgtggagataactgaaaatgcaggaaaatgtcttctcaatgagtacatggtaggaaaaagtcttcatgtgcagtcttc |
40977227 |
T |
|
| Q |
100 |
aattctt-aagccgttacaatatttgttgttttctggactctaattttgaatgttgtttgaat |
161 |
Q |
| |
|
||||||| |||||||||||| |||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40977226 |
aattcttaaagccgttacaagatttattgttatctggactctaattttgaatgttgtttgaat |
40977164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 25574004 - 25574051
Alignment:
| Q |
182 |
ttttcgaaatactttgttatacacgacaaatgagcaaattaagggaaa |
229 |
Q |
| |
|
|||| ||||||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
25574004 |
tttttgaaatactttgttatacacaaaaaatgaacaaattaagggaaa |
25574051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 24848155 - 24848211
Alignment:
| Q |
170 |
ttgaatatctcattttcgaaatactttgttatacacgacaaatgagcaaattaaggg |
226 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24848155 |
ttgattatcgcattctcgaaatactttgttatacacgacaaatgagcaaattaaggg |
24848211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 8746927 - 8746964
Alignment:
| Q |
189 |
aatactttgttatacacgacaaatgagcaaattaaggg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8746927 |
aatactttgttatacacgacaaatgagcaaattaaggg |
8746964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 36678957 - 36679004
Alignment:
| Q |
182 |
ttttcgaaatactttgttatacacgacaaatgagcaaattaagggaaa |
229 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
36678957 |
tttttgaaatattttgttatacacgaagaatgagcaaattaagggaaa |
36679004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University