View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4320_low_1 (Length: 429)
Name: NF4320_low_1
Description: NF4320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4320_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Complemental strand, 43257654 - 43257250
Alignment:
| Q |
9 |
gacatcatcatcacatgcagtcttccacaagaacttccacgttgcttgcatgcacaaacttgaaagtagtgacttagagttcttcatatcttcctccatt |
108 |
Q |
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| T |
43257654 |
gacatcatcatcacatgcagtcttccacaagaacttccacgttgcttgcatgcacaaacttgaaagtagtgacttagagttcttcatatcttcctccatt |
43257555 |
T |
|
| Q |
109 |
tatctatcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagaggcaacaaagaagagaaaaacatggctacacaaattct |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
43257554 |
tatctatcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagaggcaacaaagaagggaaaaacatggctacacaagttct |
43257455 |
T |
|
| Q |
209 |
attgtcgtcatcatctcatacttttgcagctgaagctgtaagacatagttttggagcaagatcactcccatcttcagttgggtcttctagaaaaggatcc |
308 |
Q |
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| T |
43257454 |
attgtcgtcgtcatctcttacttttgcagctgaagctgtaagacagagttttggagcaagatcactcccatcttcaattgggtcttctagaaaaggatcc |
43257355 |
T |
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| Q |
309 |
tttgttgtcaaggcagctgctcctgtcaaggtttatctctcactcaaatttttcttaat--tatgtttgctttttattaataatagtgtctcagatgacc |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43257354 |
tttgttgtcaaggcagctgctcctgtcaaggtttatctctcactcaaatttttcttaattatatgtttgctttttattaataatagtgtctcagatgacc |
43257255 |
T |
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| Q |
407 |
atatt |
411 |
Q |
| |
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||||| |
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| T |
43257254 |
atatt |
43257250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 109 - 411
Target Start/End: Complemental strand, 43261150 - 43260839
Alignment:
| Q |
109 |
tatctatcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagaggcaacaaagaagagaaaaacatggctacacaaattct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| |
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| T |
43261150 |
tatctatcattcattcttaaccatctactacattcttgaagaagaaaaaacttgttcctagaggcaacaaaggagggaaaaacatggctacacaagctct |
43261051 |
T |
|
| Q |
209 |
attgtcgtcatcatctcatacttttgcagctgaagctgtaagacatagttttggagcaagatcactcccatcttcagttgggtcttctagaaaaggatcc |
308 |
Q |
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| T |
43261050 |
agtgtcgtcatcatctcttacttttgcagctgaagctgtgagacagagttttggagcaagatcactcccatcttcaatagggtcttctagaaaaggttcc |
43260951 |
T |
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| Q |
309 |
tttgttgtcaaggcag------ctgctcctgtcaaggtttatctctcactcaaatttttcttaa--ttatgtttgcttttt-attaataatagtgtctca |
399 |
Q |
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|||||||||||||||| || ||||||| ||||| |||||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||| |
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| T |
43260950 |
tttgttgtcaaggcagcttcttctcctcctgttaaggtctatctctcactcaatttttccttaaatatatgtttgctttttcattaataatagtgtctct |
43260851 |
T |
|
| Q |
400 |
gatgaccatatt |
411 |
Q |
| |
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||||| |||||| |
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| T |
43260850 |
gatgatcatatt |
43260839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 43261197 - 43261169
Alignment:
| Q |
81 |
cttagagttcttcatatcttcctccattt |
109 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
43261197 |
cttagagttcttcatatcttcctccattt |
43261169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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