View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4320_low_3 (Length: 250)
Name: NF4320_low_3
Description: NF4320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4320_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 37111451 - 37111211
Alignment:
| Q |
1 |
tcgaaataaagtctttaaactcgactcgtagacttgaggataaaattagtaatgataaataattaactagatatgaattaggtaccaaagatacagaagc |
100 |
Q |
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| T |
37111451 |
tcgaaaaaaagtctttaaactcgactcgtagacttgaggataaaattagtaatgataaataattaactagatatgaattaggtaccaaagatacagaagc |
37111352 |
T |
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| Q |
101 |
ttcagcagcaagagccaaaatatcagcacaagacacgacagaaggacatgaattttcaacagaggttttgattttgtcaactacatcaaagccacgagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111351 |
ttcagcagcaagagccaaaatatcagcacaagacacgacagaaggacatgaattttcaacagaggttttgattttgtcaactacatcaaagccacgagct |
37111252 |
T |
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| Q |
201 |
gaattattgttaggaacagcatttttctcacttagtattat |
241 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |
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| T |
37111251 |
gaattattgttaggaacagcatttttctcacttagtgttat |
37111211 |
T |
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Back To:
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 8361824 - 8361859
Alignment:
| Q |
104 |
agcagcaagagccaaaatatcagcacaagacacgac |
139 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
8361824 |
agcagcaagagccaaaatatcagcacaagacacgac |
8361859 |
T |
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