View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4321-Insertion-4 (Length: 139)
Name: NF4321-Insertion-4
Description: NF4321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4321-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 4e-39; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 32636630 - 32636723
Alignment:
| Q |
1 |
catacctcttgtatctcatatcattggttatggtttttgttcttaaagatgttctcaattatatgtaatgttcttaattttgatttcaagacaa |
94 |
Q |
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| T |
32636630 |
catacctcttgtatctgatatcattggttatggtttttgttcttaaagatgttctcaattatatgtaatgttcttaatttcgatatcaagacaa |
32636723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 32636740 - 32636830
Alignment:
| Q |
50 |
tgttctcaattatatgtaatgttcttaattttgatttcaagacaaaatggaat-aaaaaaccctagatgtggtttattggataatattgtg |
139 |
Q |
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| T |
32636740 |
tgttctcaattatgtgtagtgtccttaattttgatttcaagacaaaatggaataaaaaaaccctagatgtggtttattggataatattgtg |
32636830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 32618499 - 32618588
Alignment:
| Q |
1 |
catacctcttgtatctcatatcattggttatggtttttgttcttaaagatgttctcaattatatgtaatgttcttaattttgatttcaag |
90 |
Q |
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| T |
32618499 |
catacctcttgtatctaatatcattagttatggtttatgttctcaaagatgttctcaattatgtgtagtgttcttaattttgatatcaag |
32618588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 32618601 - 32618706
Alignment:
| Q |
33 |
gtttttgttcttaaagatgttctcaattatatgtaatgttcttaattttgatttcaagacaaaatggaataaaaaaccctagatgtggtttattggataa |
132 |
Q |
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| T |
32618601 |
gtttttgttctcaaagatgttctcaattatgtgtagtgtccttaattttgatatcaagacaaggtgaaataaaaaa-tctagatatggttcattggaaaa |
32618699 |
T |
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| Q |
133 |
tattgtg |
139 |
Q |
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| T |
32618700 |
tattgtg |
32618706 |
T |
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